Difference between revisions of "FISUC RS12100"

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(Created page with "Category:reaction == Reaction PYRUVFORMLY-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54] * direction: ** reversible * common-name: ** formate c-...")
 
(Created page with "Category:gene == Gene FISUC_RS12100 == * common-name: ** trmd * transcription-direction: ** negative * centisome-position: ** 77.41839 * left-end-position: ** 2974906...")
 
(10 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction PYRUVFORMLY-RXN ==
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== Gene FISUC_RS12100 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54]
 
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** formate c-acetyltransferase
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** trmd
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== Reaction formula ==
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* transcription-direction:
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* 1 [[ACETYL-COA]][c] '''+''' 1 [[FORMATE]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FISUC_RS05215]]
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** 77.41839   
 +
* left-end-position:
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** 2974906
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* right-end-position:
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** 2975610
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[RXN-12458]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS07120]]
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* [[RXN-14517]]
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS07105]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7285]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''4''' reactions in the full pathway
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7286]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''4''' reactions in the full pathway
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6829]]
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== Pathway(s) ==
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** '''1''' reactions found over '''15''' reactions in the full pathway
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* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
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{{#set: common-name=trmd}}
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** '''9''' reactions found over '''7''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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* [[FERMENTATION-PWY]], mixed acid fermentation:
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{{#set: centisome-position=77.41839    }}
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** '''14''' reactions found over '''16''' reactions in the full pathway
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{{#set: left-end-position=2974906}}
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* [[PWY-5485]], pyruvate fermentation to acetate IV:
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{{#set: right-end-position=2975610}}
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** '''4''' reactions found over '''3''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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* [[PWY-5480]], pyruvate fermentation to ethanol I:
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{{#set: nb reaction associated=2}}
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** '''3''' reactions found over '''3''' reactions in the full pathway
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{{#set: nb pathway associated=3}}
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* [[PWY-5493]], reductive monocarboxylic acid cycle:
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11847 11847]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00212 R00212]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P32674 P32674]
 
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** [http://www.uniprot.org/uniprot/O26446 O26446]
 
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** [http://www.uniprot.org/uniprot/P75793 P75793]
 
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** [http://www.uniprot.org/uniprot/P42632 P42632]
 
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** [http://www.uniprot.org/uniprot/O28823 O28823]
 
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** [http://www.uniprot.org/uniprot/O32797 O32797]
 
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** [http://www.uniprot.org/uniprot/Q46266 Q46266]
 
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** [http://www.uniprot.org/uniprot/P09373 P09373]
 
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** [http://www.uniprot.org/uniprot/P37836 P37836]
 
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{{#set: ec-number=ec-2.3.1.54}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=formate c-acetyltransferase}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum|ecoli|faecalibacterium|bthetaiotaomicron|genome|bifidobacterium}}
 

Latest revision as of 11:22, 17 October 2022

Gene FISUC_RS12100

  • common-name:
    • trmd
  • transcription-direction:
    • negative
  • centisome-position:
    • 77.41839
  • left-end-position:
    • 2974906
  • right-end-position:
    • 2975610

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7285
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7286
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6829
    • 1 reactions found over 15 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12100&oldid=94763"