Difference between revisions of "FISUC RS12100"

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(Created page with "Category:reaction == Reaction RXN-9929 == * ec-number: ** [http://enzyme.expasy.org/EC/1.3.98.1 ec-1.3.98.1] * direction: ** left-to-right * common-name: ** dihydroorotate...")
(Created page with "Category:gene == Gene FISUC_RS12100 == * common-name: ** trmd * transcription-direction: ** negative * centisome-position: ** 77.41839 * left-end-position: ** 2974906...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-9929 ==
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== Gene FISUC_RS12100 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.3.98.1 ec-1.3.98.1]
 
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** dihydroorotate oxidase
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** trmd
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== Reaction formula ==
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* transcription-direction:
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* 1 [[DI-H-OROTATE]][c] '''+''' 1 [[FUM]][c] '''=>''' 1 [[OROTATE]][c] '''+''' 1 [[SUC]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS02415]]
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** 77.41839   
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* left-end-position:
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** 2974906
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* right-end-position:
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** 2975610
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[RXN-12458]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-14517]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS00540]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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== Pathway(s) associated ==
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* [[PWY-7790]], UMP biosynthesis II:
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* [[PWY-7285]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** '''1''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-7286]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6829]]
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== External links  ==
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** '''1''' reactions found over '''15''' reactions in the full pathway
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=trmd}}
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* RHEA:
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{{#set: transcription-direction=negative}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30062 30062]
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{{#set: centisome-position=77.41839    }}
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* UNIPROT:
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{{#set: left-end-position=2974906}}
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** [http://www.uniprot.org/uniprot/P74782 P74782]
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{{#set: right-end-position=2975610}}
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** [http://www.uniprot.org/uniprot/Q63707 Q63707]
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{{#set: organism associated=fsucgem}}
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** [http://www.uniprot.org/uniprot/Q48240 Q48240]
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{{#set: nb reaction associated=2}}
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** [http://www.uniprot.org/uniprot/P32746 P32746]
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{{#set: nb pathway associated=3}}
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** [http://www.uniprot.org/uniprot/Q02127 Q02127]
 
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** [http://www.uniprot.org/uniprot/P32748 P32748]
 
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** [http://www.uniprot.org/uniprot/P28294 P28294]
 
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** [http://www.uniprot.org/uniprot/P28272 P28272]
 
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** [http://www.uniprot.org/uniprot/P46539 P46539]
 
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** [http://www.uniprot.org/uniprot/Q9CFC9 Q9CFC9]
 
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** [http://www.uniprot.org/uniprot/P25996 P25996]
 
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** [http://www.uniprot.org/uniprot/Q58070 Q58070]
 
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** [http://www.uniprot.org/uniprot/P0A7E1 P0A7E1]
 
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** [http://www.uniprot.org/uniprot/Q9JX66 Q9JX66]
 
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** [http://www.uniprot.org/uniprot/Q9PPB6 Q9PPB6]
 
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** [http://www.uniprot.org/uniprot/Q9CFW8 Q9CFW8]
 
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** [http://www.uniprot.org/uniprot/P45477 P45477]
 
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** [http://www.uniprot.org/uniprot/P32747 P32747]
 
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** [http://www.uniprot.org/uniprot/P07670 P07670]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01867 R01867]
 
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</div>
 
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{{#set: ec-number=ec-1.3.98.1}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=dihydroorotate oxidase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome|bthetaiotaomicron}}
 

Latest revision as of 11:22, 17 October 2022

Gene FISUC_RS12100

  • common-name:
    • trmd
  • transcription-direction:
    • negative
  • centisome-position:
    • 77.41839
  • left-end-position:
    • 2974906
  • right-end-position:
    • 2975610

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7285
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7286
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6829
    • 1 reactions found over 15 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12100&oldid=94763"