Difference between revisions of "RXN-11319"

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(Created page with "Category:reaction == Reaction TRANS-RXN-141B == * direction: ** left-to-right == Reaction formula == * 1 NI+2[e] '''=>''' 1 NI+2[c] == Gene(s) associated with this...")
(Created page with "Category:reaction == Reaction RXN-11319 == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.99.19 ec-4.1.99.19] * direction: ** left-to-right * common-name: ** 2-iminoacet...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRANS-RXN-141B ==
+
== Reaction RXN-11319 ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.99.19 ec-4.1.99.19]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** 2-iminoacetate synthase thih
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NI+2]][e] '''=>''' 1 [[NI+2]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[TYR]][c] '''=>''' 1 [[CH33ADO]][c] '''+''' 1 [[CPD-108]][c] '''+''' 1 [[CPD-12279]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS06185]]
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* Gene: [[FISUC_RS14640]]
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** Category: [[manual]]
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** Category: [[annotation]]
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*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS00825]]
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** Category: [[orthology]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS00830]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria):
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the orthology part in the first version of the fibrobacter gem
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R10246 R10246]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26364 26364]
 +
{{#set: ec-number=ec-4.1.99.19}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
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{{#set: common-name=2-iminoacetate synthase thih}}
−
{{#set: nb pathway associated=0}}
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{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction comment=present in the orthology part in the first version of the fibrobacter gem}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
−
{{#set: reconstruction source=add_expert_reactions}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=ecoli|fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:17, 17 October 2022

Reaction RXN-11319

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • 2-iminoacetate synthase thih

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=RXN-11319&oldid=92891"