Difference between revisions of "PYRAMKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN-12195 == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.15 ec-3.6.1.15] * direction: ** left-to-right == Reaction formula == * 1 CT...")
(Created page with "Category:reaction == Reaction PYRAMKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35] * direction: ** left-to-right * common-name: ** pyridoxami...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12195 ==
+
== Reaction PYRAMKIN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.1.15 ec-3.6.1.15]
+
** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** pyridoxamine kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAMINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS02110]]
+
* Gene: [[FISUC_RS06730]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS08635]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
+
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
+
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25105 25105]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00569 R00569]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493]
−
{{#set: ec-number=ec-3.6.1.15}}
+
{{#set: ec-number=ec-2.7.1.35}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=pyridoxamine kinase}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli}}
+
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Latest revision as of 11:17, 17 October 2022

Reaction PYRAMKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • pyridoxamine kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants):
    • 4 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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