Difference between revisions of "FSU RS00280"
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(Created page with "Category:gene == Gene FSU_RS01990 == * common-name: ** rpia * transcription-direction: ** positive * centisome-position: ** 12.318098 * left-end-position: ** 473385 *...") |
(Created page with "Category:gene == Gene FSU_RS00280 == * transcription-direction: ** positive * centisome-position: ** 1.6290901 * left-end-position: ** 62606 * right-end-position: ** 6...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene FSU_RS00280 == |
| − | |||
| − | |||
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 1.6290901 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 62606 |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 63394 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[fsucgem]] | * [[fsucgem]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[GLYCEROL-2-PHOSPHATASE-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * [[MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * [[RXN-10949]] | ||
| + | ** Category: [[manual]] | ||
| + | *** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars | ||
| + | * [[RXN-10952]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * [[RXN-10953]] | ||
| + | ** Category: [[manual]] | ||
| + | *** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars | ||
| + | * [[RXN-10954]] | ||
| + | ** Category: [[manual]] | ||
| + | *** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars | ||
| + | * [[RXN-7253]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[RXN0-5408]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| + | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[ | + | * [[PWY-2301]] |
| − | + | ** '''2''' reactions found over '''2''' reactions in the full pathway | |
| − | + | * [[PWY-6363]] | |
| − | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-4702]] |
| − | ** ''' | + | ** '''2''' reactions found over '''14''' reactions in the full pathway |
| − | * [[PWY- | ||
| − | ** ''' | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
| − | {{#set: centisome-position= | + | {{#set: centisome-position=1.6290901 }} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=62606}} |
| − | {{#set: right-end-position= | + | {{#set: right-end-position=63394}} |
{{#set: organism associated=fsucgem}} | {{#set: organism associated=fsucgem}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=8}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
Latest revision as of 11:20, 17 October 2022
Contents
Gene FSU_RS00280
- transcription-direction:
- positive
- centisome-position:
- 1.6290901
- left-end-position:
- 62606
- right-end-position:
- 63394
Organism(s) associated with this gene
Reaction(s) associated
- GLYCEROL-2-PHOSPHATASE-RXN
- Category: orthology
- source: ecoli; tool: orthofinder; comment: n.a
- Category: orthology
- MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: orthology
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- Category: annotation
- RXN-10949
- Category: manual
- source: add_expert_reactions; tool: unknown-tool; comment: added to improve flux in sugars
- Category: manual
- RXN-10952
- Category: orthology
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- Category: orthology
- RXN-10953
- Category: manual
- source: add_expert_reactions; tool: unknown-tool; comment: added to improve flux in sugars
- Category: manual
- RXN-10954
- Category: manual
- source: add_expert_reactions; tool: unknown-tool; comment: added to improve flux in sugars
- Category: manual
- RXN-7253
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN0-5408
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: orthology
- source: ecoli; tool: orthofinder; comment: n.a
- source: bifidobacterium; tool: orthofinder; comment: n.a
- source: plantarum; tool: orthofinder; comment: n.a
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-2301
- 2 reactions found over 2 reactions in the full pathway
- PWY-6363
- 1 reactions found over 3 reactions in the full pathway
- PWY-4702
- 2 reactions found over 14 reactions in the full pathway
