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 Common-nameEc-numberNb gene associatedNb pathway associatedNb reconstruction sourceReconstruction categoryReconstruction toolReconstruction comment
2.7.1.148-RXN4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseEc-2.7.1.14822Orthology
Annotation		Orthofinder
Pathwaytools		N.a
2.7.1.90-RXNDiphosphate--fructose-6-phosphate 1-phosphotransferaseEc-2.7.1.9021AnnotationPathwaytoolsN.a
2.7.10.1-RXNPolysaccharide biosynthesis tyrosine autokinaseEc-2.7.12.1
Ec-2.7.10.1
Ec-2.7.10.2		60AnnotationPathwaytoolsN.a
2.7.13.3-RXNHistidine kinaseEc-2.7.13.320AnnotationPathwaytoolsN.a
2.7.3.9-RXNPhosphoenolpyruvate--protein phosphotransferaseEc-2.7.3.920AnnotationPathwaytoolsN.a
2.7.7.1-RXNEc-2.7.7.122OrthologyOrthofinderN.a
2.7.7.13-RXNMannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomeraseEc-2.7.7.1322AnnotationPathwaytoolsN.a
2.7.7.15-RXNEc-2.7.7.1516ManualCurationPresent in the orthology part in the first version of the fibrobacter gem
2.7.7.39-RXNGlycerol-3-phosphate cytidylyltransferaseEc-2.7.7.3924Orthology
Annotation		Orthofinder
Pathwaytools		N.a
2.7.7.60-RXN2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseEc-2.7.7.6042Orthology
Annotation		Orthofinder
Pathwaytools		N.a
2.7.7.8-RXNPolyribonucleotide nucleotidyltransferaseEc-2.7.7.820AnnotationPathwaytoolsN.a
2.7.8.25-RXNEc-2.4.2.5202Gap-fillingMenecoAdded for gapfilling
2.7.8.6-RXNEc-2.7.8.610ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
2.8.1.6-RXNBiotin synthase biobEc-2.8.1.642AnnotationPathwaytoolsN.a
2OXOGLUTARATEDEH-RXN2-oxoglutarate dehydrogenase complexEc-1.2.1.m903Gap-fillingMenecoAdded for gapfilling
2PGADEHYDRAT-RXNPhosphopyruvate hydrataseEc-4.2.1.11220Orthology
Annotation		Orthofinder
Pathwaytools		N.a
2TRANSKETO-RXNTransketolaseEc-2.2.1.127AnnotationPathwaytoolsN.a
3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN3-methyl-2-oxobutanoate hydroxymethyltransferaseEc-2.1.2.1121AnnotationPathwaytoolsN.a
3-DEHYDROQUINATE-DEHYDRATASE-RXNType i 3-dehydroquinate dehydrataseEc-4.2.1.1024Orthology
Annotation		Orthofinder
Pathwaytools		N.a
3-DEHYDROQUINATE-SYNTHASE-RXN3-dehydroquinate synthaseEc-4.2.3.421Orthology
Annotation		Orthofinder
Pathwaytools		N.a
3-HYDROXYDECANOYL-ACP-DEHYDR-RXN3-hydroxyacyl-acp dehydratase fabzEc-4.2.1.59
Ec-2.3.1.86
Ec-2.3.1.85		21AnnotationPathwaytoolsN.a
3-ISOPROPYLMALDEHYDROG-RXN3-isopropylmalate dehydrogenase22Orthology
Annotation		Orthofinder
Pathwaytools		N.a
3-ISOPROPYLMALISOM-RXN3-isopropylmalate dehydratase42Orthology
Annotation		Orthofinder
Pathwaytools		N.a
3-NUCLEOTID-RXN5'/3'-nucleotidase sureEc-3.1.3.620AnnotationPathwaytoolsN.a
3-OCTAPRENYL-4-OHBENZOATE-DECARBOX-RXNUbid family decarboxylaseEc-4.1.1.9831Orthology
Annotation		Orthofinder
Pathwaytools		N.a
3-OXOACYL-ACP-REDUCT-RXN3-oxoacyl-acp reductase fabgEc-1.1.1.100
Ec-2.3.1.86
Ec-2.3.1.85		41AnnotationPathwaytoolsN.a
3-OXOACYL-ACP-SYNTH-BASE-RXNBeta-ketoacyl-acp synthase iiEc-2.3.1.179
Ec-2.3.1.41
Ec-2.3.1.86
Ec-2.3.1.85		74Orthology
Annotation		Orthofinder
Pathwaytools		N.a
3-OXOACYL-ACP-SYNTH-RXNBeta-ketoacyl-acp synthase iiEc-2.3.1.179
Ec-2.3.1.41
Ec-2.3.1.86
Ec-2.3.1.85		41AnnotationPathwaytoolsN.a
3.1.1.72-RXNAcetylxylan esteraseEc-3.1.1.7220AnnotationPathwaytoolsN.a
3.1.1.73-RXNFeruloyl esteraseEc-3.1.1.7321AnnotationPathwaytoolsN.a
3.1.11.2-RXNExodeoxyribonuclease iiiEc-3.1.11.220AnnotationPathwaytoolsN.a
3.1.11.6-RXNExodeoxyribonuclease vii small subunit
Exodeoxyribonuclease vii large subunit		Ec-3.1.11.640AnnotationPathwaytoolsN.a
3.1.13.3-RXNBifunctional oligoribonuclease/pap phosphatase nrna
Oligoribonuclease		Ec-3.1.13.340AnnotationPathwaytoolsN.a
3.1.13.5-RXNRibonuclease dEc-3.1.13.520AnnotationPathwaytoolsN.a
3.1.21.1-RXNDeoxyribonuclease iEc-3.1.21.120AnnotationPathwaytoolsN.a
3.1.21.2-RXNDeoxyribonuclease ivEc-3.1.21.220AnnotationPathwaytoolsN.a
3.1.21.3-RXNEc-3.1.21.310ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.1.22.4-RXNCrossover junction endodeoxyribonuclease ruvc
Holliday junction resolvase ruvx		Ec-3.1.22.440AnnotationPathwaytoolsN.a
3.1.26.3-RXNRibonuclease iiiEc-3.1.26.330AnnotationPathwaytoolsN.a
3.1.26.4-RXNRibonuclease hii
Ribonuclease h		Ec-3.1.26.440AnnotationPathwaytoolsN.a
3.1.26.5-RXNRibonuclease p protein componentEc-3.1.26.521AnnotationPathwaytoolsN.a
3.1.3.16-RXNProtein phosphatase 2c domain-containing proteinEc-3.1.3.1660AnnotationPathwaytoolsN.a
3.1.4.2-RXNEc-3.1.4.211OrthologyOrthofinderN.a
3.1.4.44-RXNEc-3.1.4.4410OrthologyOrthofinderN.a
3.2.1.14-RXNEc-3.2.1.1413ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.2.1.23-RXNEc-3.2.1.2310ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.2.1.33-RXNEc-3.2.1.3300ManualCurationTo improve flux of network
3.2.1.37-RXNEc-3.2.1.3711ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.2.1.52-RXNBeta-n-acetylhexosaminidaseEc-3.2.1.5220AnnotationPathwaytoolsN.a
3.2.1.55-RXNEc-3.2.1.5510ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.2.1.73-RXNEc-3.2.1.7320ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.2.1.78-RXNMannan endo-1,4-beta-mannosidaseEc-3.2.1.7821AnnotationPathwaytoolsN.a
3.2.1.8-RXNEndo-1,4-beta-xylanase c
Xylanase		Ec-3.2.1.842AnnotationPathwaytoolsN.a
3.2.1.89-RXNArabinogalactan endo-1,4-beta-galactosidaseEc-3.2.1.8920AnnotationPathwaytoolsN.a
3.2.1.91-RXNEc-3.2.1.9101ManualCurationAdded in the first version of the fibrobacter gem manually
3.2.2.15-RXNDna-deoxyinosine glycosylaseEc-3.2.2.1520AnnotationPathwaytoolsN.a
3.2.2.22-RXNRicin domain-containing proteinEc-3.2.2.2220AnnotationPathwaytoolsN.a
3.2.2.24-RXNAdp-ribosylglycohydrolaseEc-3.2.2.2420AnnotationPathwaytoolsN.a
3.4.11.1-RXNEc-3.4.11.1
Ec-3.4.11.9		20ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.4.11.18-RXNType i methionyl aminopeptidaseEc-3.4.11.1820AnnotationPathwaytoolsN.a
3.4.11.2-RXNEc-3.4.11.2
Ec-3.4.11.14		10ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.4.11.21-RXNEc-3.4.11.2110ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.4.11.4-RXNPeptidase tEc-3.4.11.420AnnotationPathwaytoolsN.a
3.4.13.21-RXNEc-3.4.13.2110ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.4.13.22-RXNEc-3.4.13.2212OrthologyOrthofinderN.a
3.4.16.4-RXNPenicillin-binding protein 2
D-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase		Ec-3.4.16.440AnnotationPathwaytoolsN.a
3.4.17.13-RXNLd-carboxypeptidaseEc-3.4.17.1320AnnotationPathwaytoolsN.a
3.4.17.8-RXNPenicillin-binding protein 2
D-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase		Ec-3.4.16.4
Ec-3.4.17.8		40AnnotationPathwaytoolsN.a
3.4.21.53-RXNEndopeptidase laEc-3.4.21.5320AnnotationPathwaytoolsN.a
3.4.21.88-RXNTranscriptional repressor lexaEc-3.4.21.8820AnnotationPathwaytoolsN.a
3.4.21.89-RXNSignal peptidase iEc-3.4.21.8920AnnotationPathwaytoolsN.a
3.4.21.92-RXNAtp-dependent clp protease proteolytic subunitEc-3.4.21.9240AnnotationPathwaytoolsN.a
3.4.23.43-RXNPrepilin peptidaseEc-3.4.23.4320AnnotationPathwaytoolsN.a
3.4.24.56-RXNEc-3.4.24.5630ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.5.1.27-RXNPeptide deformylaseEc-3.5.1.8820AnnotationPathwaytoolsN.a
3.5.1.88-RXNPeptide deformylaseEc-3.5.1.8820AnnotationPathwaytoolsN.a
3.5.5.1-RXNNitrilaseEc-3.5.5.120AnnotationPathwaytoolsN.a
3.6.1.41-RXNEc-3.6.1.4110OrthologyOrthofinderN.a
3.6.3.1-RXNEc-7.6.2.110ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
3.6.3.30-RXNEc-7.2.2.760OrthologyOrthofinderN.a
3.6.3.35-RXNEc-7.2.2.520OrthologyOrthofinderN.a
3.8.1.11-RXNHad family hydrolaseEc-3.8.1.1110AnnotationPathwaytoolsN.a
35-CYCLIC-GMP-PHOSPHODIESTERASE-RXNEc-3.1.4.3550OrthologyOrthofinderN.a
3PGAREARR-RXN2,3-bisphosphoglycerate-independent phosphoglycerate mutaseEc-5.4.2.12215Orthology
Annotation		Orthofinder
Pathwaytools		N.a
4-HYDROXY-2-KETOPIMELATE-LYSIS-RXNHpch/hpai aldolase/citrate lyase family proteinEc-4.1.2.5221AnnotationPathwaytoolsN.a
4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXNEc-2.6.1.2331OrthologyOrthofinderN.a
4.1.1.32-RXNPhosphoenolpyruvate carboxykinase (gtp)Ec-4.1.1.3222AnnotationPathwaytoolsN.a
4.1.1.80-RXNEc-4.1.1.8002ManualCurationTo improve flux of network
4.1.1.81-RXNEc-4.1.1.8101ManualCurationAdded to reach adenosylcobinamide-gdp
4.1.1.82-RXNPhosphonopyruvate decarboxylaseEc-4.1.1.8226AnnotationPathwaytoolsN.a
4.1.99.4-RXNEc-3.5.99.710ManualCurationPresent in the annotation part in the first version of the fibrobacter gem
4.2.1.58-RXN3-hydroxyacyl-acp dehydratase fabzEc-4.2.1.59
Ec-2.3.1.86
Ec-2.3.1.85		23AnnotationPathwaytoolsN.a
4.2.1.59-RXN3-hydroxyacyl-acp dehydratase fabzEc-4.2.1.59
Ec-2.3.1.86
Ec-2.3.1.85		52Orthology
Annotation		Orthofinder
Pathwaytools		N.a
4.2.1.61-RXN3-hydroxyacyl-acp dehydratase fabzEc-4.2.1.59
Ec-2.3.1.86
Ec-2.3.1.85		22AnnotationPathwaytoolsN.a
4.2.2.2-RXNPectate lyaseEc-4.2.2.270AnnotationPathwaytoolsN.a
4.2.2.3-RXNAlginate lyaseEc-4.2.2.321AnnotationPathwaytoolsN.a
4.2.99.18-RXNEndonuclease iiiEc-4.2.99.1820AnnotationPathwaytoolsN.a
4.99.1.3-RXNEc-4.99.1.301ManualCurationAdded to reach cpd-691
4OH2OXOGLUTARALDOL-RXNEc-4.1.3.1611OrthologyOrthofinderN.a
4OHBENZOATE-OCTAPRENYLTRANSFER-RXN4-hydroxybenzoate octaprenyltransferaseEc-2.5.1.3922AnnotationPathwaytoolsN.a
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