Curation

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 Common-nameEc-numberReconstruction categoryReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.1.1.288-RXNEc-1.1.1.288ManualPrevious menecoReaction added with meneco (previous version)01
1.2.3.14-RXNEc-1.2.3.14ManualPrevious menecoReaction added with meneco (previous version)01
1.3.3.12-RXNEc-1.3.3.12ManualPrevious menecoReaction added with meneco (previous version)00
ACECOATRANS-RXN-CPD-14717/ACET//R-2-HYDROXYSTEARATE/ACETYL-COA.47.ManualPrevious menecoReaction added with meneco (previous version)00
Biomass rxnManualBiomass reactionForfba00
DIAMINOPIMELATE-DEHYDROGENASE-RXNEc-1.4.1.16ManualPrevious menecoReaction added with meneco (previous version)01
Exchange BIOMASSManualBiomass reactionExchange biomass to boundary00
ExchangeSeed-ADENOSYLCOBALAMINManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-AMMONIAManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-BIOTINManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CA+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CARBON-DIOXIDEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CL-ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CO+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-COB-I-ALAMINManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-3ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-315ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-EDTAManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+3ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-K+ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-LightManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MG+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MN+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NA+ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NITRATEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-OXYGEN-MOLECULEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-PROTONManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-SULFATEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-THIAMINEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-WATERManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-ZN+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
MANNKIN-RXN-CPD-12601/ATP//MANNOSE-6P/ADP/PROTON.37.ManualPrevious menecoReaction added with meneco (previous version)00
MANNKIN-RXN-D-mannopyranose/ATP//MANNOSE-6P/ADP/PROTON.43.ManualPrevious menecoReaction added with meneco (previous version)00
RXN-11026-PALMITYL-COA/OXYGEN-MOLECULE//CPD0-2117/HYDROGEN-PEROXIDE.58.ManualPrevious menecoReaction added with meneco (previous version)00
RXN-11153L-galactono-1,4-lactone dehydrogenaseManualPrevious menecoReaction added with meneco (previous version)01
RXN-11876Ec-5.5.1.9ManualReactions add sjapCuration sterols (girard et al.)11
RXN-11878Ec-1.3.1.70ManualReactions add sjapCuration sterols (girard et al.)11
RXN-118814α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol demethylase
4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol 14-demethylase
Ec-1.14.13.70Manual
Orthology
Annotation
Saccharina japonica genome
Output pantograph ectocarpus siliculosus
Reactions add sjap
N.a
Curation sterols (girard et al.)
10
RXN-11887Ec-1.14.19.20ManualReactions add sjapCuration sterols (girard et al.)12
RXN-13431Ec-2.3.1ManualPrevious menecoReaction added with meneco (previous version)01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Manual
Gap-filling
Gapfilling solution with meneco draft medium
Reactions add sjap
Added for gapfilling
Curation sterols (girard et al.)
00
RXN-19200Ec-1.23.5ManualSjapTransformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)01
RXN-19202Ec-1.14.13ManualSjapTransformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)11
RXN-21829Ec-1.14.18.10ManualReactions add sjapCuration sterols (girard et al.)00
RXN-21830Ec-1.1.1.418ManualReactions add sjapCuration sterols (girard et al.)01
RXN-21831Ec-1.1.1.270ManualReactions add sjapCuration sterols (girard et al.)01
RXN-21833ManualReaction creator sjapCuration sterols (girard et al.)01
... further results