Manual

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 Common-nameEc-numberReconstruction toolReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.1.1.288-RXNEc-1.1.1.288CurationPrevious menecoReaction added with meneco (previous version)01
1.2.3.14-RXNEc-1.2.3.14CurationPrevious menecoReaction added with meneco (previous version)01
1.3.3.12-RXNEc-1.3.3.12CurationPrevious menecoReaction added with meneco (previous version)00
ACECOATRANS-RXN-CPD-14717/ACET//R-2-HYDROXYSTEARATE/ACETYL-COA.47.CurationPrevious menecoReaction added with meneco (previous version)00
Biomass rxnCurationBiomass reactionForfba00
DIAMINOPIMELATE-DEHYDROGENASE-RXNEc-1.4.1.16CurationPrevious menecoReaction added with meneco (previous version)01
Exchange BIOMASSCurationBiomass reactionExchange biomass to boundary00
ExchangeSeed-ADENOSYLCOBALAMINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-AMMONIACurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-BIOTINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CA+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CARBON-DIOXIDECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CL-CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CO+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-COB-I-ALAMINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-3CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-315CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-EDTACurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+3CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-K+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-LightCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MG+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MN+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NA+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NITRATECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-OXYGEN-MOLECULECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-PROTONCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-SULFATECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-THIAMINECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-WATERCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-ZN+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
MANNKIN-RXN-CPD-12601/ATP//MANNOSE-6P/ADP/PROTON.37.CurationPrevious menecoReaction added with meneco (previous version)00
MANNKIN-RXN-D-mannopyranose/ATP//MANNOSE-6P/ADP/PROTON.43.CurationPrevious menecoReaction added with meneco (previous version)00
RXN-11026-PALMITYL-COA/OXYGEN-MOLECULE//CPD0-2117/HYDROGEN-PEROXIDE.58.CurationPrevious menecoReaction added with meneco (previous version)00
RXN-11153L-galactono-1,4-lactone dehydrogenaseCurationPrevious menecoReaction added with meneco (previous version)01
RXN-11876Ec-5.5.1.9CurationReactions add sjapCuration sterols (girard et al.)11
RXN-11878Ec-1.3.1.70CurationReactions add sjapCuration sterols (girard et al.)11
RXN-118814α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol demethylase
4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol 14-demethylase
Ec-1.14.13.70Pathwaytools
Pantograph
Curation
Saccharina japonica genome
Output pantograph ectocarpus siliculosus
Reactions add sjap
N.a
Curation sterols (girard et al.)
10
RXN-11887Ec-1.14.19.20CurationReactions add sjapCuration sterols (girard et al.)12
RXN-13431Ec-2.3.1CurationPrevious menecoReaction added with meneco (previous version)01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Meneco
Curation
Gapfilling solution with meneco draft medium
Reactions add sjap
Added for gapfilling
Curation sterols (girard et al.)
00
RXN-19200Ec-1.23.5CurationSjapTransformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)01
RXN-19202Ec-1.14.13CurationSjapTransformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)11
RXN-21829Ec-1.14.18.10CurationReactions add sjapCuration sterols (girard et al.)00
RXN-21830Ec-1.1.1.418CurationReactions add sjapCuration sterols (girard et al.)01
RXN-21831Ec-1.1.1.270CurationReactions add sjapCuration sterols (girard et al.)01
RXN-21833CurationReaction creator sjapCuration sterols (girard et al.)01
... further results