Difference between revisions of "RXN-7651"
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(Created page with "Category:reaction == Reaction RXN3O-4113 == * direction: ** left-to-right * common-name: ** alcohol dehydrogenase (nad) ** tyrosol dehydrogenase * ec-number: ** [http://en...") |
(Created page with "Category:reaction == Reaction RXN0-1461 == * direction: ** left-to-right * common-name: ** coproporphyrinogen oxidase ** coproporphyrinogen iii oxidase * ec-number: ** [ht...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction RXN0-1461 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** coproporphyrinogen oxidase |
− | ** | + | ** coproporphyrinogen iii oxidase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.3.3.3 ec-1.3.3.3] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ11059]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ05457]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ15840]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: |
− | ** '''3''' reactions found over ''' | + | ** '''5''' reactions found over '''4''' reactions in the full pathway |
− | * [[ | + | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): |
− | ** ''' | + | ** '''6''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18258 18258] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1] | ||
+ | ** [http://www.uniprot.org/uniprot/P36552 P36552] | ||
+ | ** [http://www.uniprot.org/uniprot/O25376 O25376] | ||
+ | ** [http://www.uniprot.org/uniprot/P36553 P36553] | ||
+ | ** [http://www.uniprot.org/uniprot/P33771 P33771] | ||
+ | ** [http://www.uniprot.org/uniprot/P43899 P43899] | ||
+ | ** [http://www.uniprot.org/uniprot/O25824 O25824] | ||
+ | ** [http://www.uniprot.org/uniprot/P54304 P54304] | ||
+ | ** [http://www.uniprot.org/uniprot/P11353 P11353] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86] | ||
+ | ** [http://www.uniprot.org/uniprot/P36551 P36551] | ||
+ | ** [http://www.uniprot.org/uniprot/P35055 P35055] | ||
+ | ** [http://www.uniprot.org/uniprot/P43898 P43898] | ||
+ | ** [http://www.uniprot.org/uniprot/P72848 P72848] | ||
+ | ** [http://www.uniprot.org/uniprot/P73245 P73245] | ||
+ | ** [http://www.uniprot.org/uniprot/P74132 P74132] | ||
+ | ** [http://www.uniprot.org/uniprot/Q51676 Q51676] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42946 Q42946] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42840 Q42840] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39581 Q39581] | ||
+ | ** [http://www.uniprot.org/uniprot/P95651 P95651] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=coproporphyrinogen iii oxidase|coproporphyrinogen oxidase}} |
− | {{#set: ec-number=ec-1. | + | {{#set: ec-number=ec-1.3.3.3}} |
{{#set: nb gene associated=3}} | {{#set: nb gene associated=3}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:06, 14 January 2021
Contents
Reaction RXN0-1461
- direction:
- left-to-right
- common-name:
- coproporphyrinogen oxidase
- coproporphyrinogen iii oxidase
- ec-number:
Reaction formula
- 1 COPROPORPHYRINOGEN_III[c] + 1 OXYGEN-MOLECULE[c] + 2 PROTON[c] => 2 CARBON-DIOXIDE[c] + 1 PROTOPORPHYRINOGEN[c] + 2 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ11059
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ05457
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15840
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
- 5 reactions found over 4 reactions in the full pathway
- CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
- 6 reactions found over 9 reactions in the full pathway
- PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
- 5 reactions found over 9 reactions in the full pathway
- HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links