Difference between revisions of "SJ01054"
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(Created page with "Category:gene == Gene SJ05859 == * transcription-direction: ** positive * right-end-position: ** 21314 * left-end-position: ** 8365 * centisome-position: ** 9.608868 =...") |
(Created page with "Category:gene == Gene SJ13450 == * transcription-direction: ** positive * right-end-position: ** 436126 * left-end-position: ** 425411 * centisome-position: ** 58.388256...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ13450 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 436126 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 425411 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 58.388256 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[2PGADEHYDRAT-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]] |
− | |||
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
− | |||
− | |||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** ''' | + | * [[GLUCONEO-PWY]] |
− | * [[PWY | + | ** '''12''' reactions found over '''13''' reactions in the full pathway |
− | ** ''' | + | * [[P124-PWY]] |
− | * [[PWY- | + | ** '''12''' reactions found over '''15''' reactions in the full pathway |
− | ** '''16''' reactions found over ''' | + | * [[PWY-2221]] |
− | * [[PWY66- | + | ** '''6''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[NPGLUCAT-PWY]] |
− | * [[PWY- | + | ** '''4''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-1622]] |
− | * [[PWY- | + | ** '''6''' reactions found over '''13''' reactions in the full pathway |
− | ** ''' | + | * [[P122-PWY]] |
− | * [[PWY- | + | ** '''16''' reactions found over '''18''' reactions in the full pathway |
− | ** '''1''' reactions found over '''5''' reactions in the full pathway | + | * [[PWY-5484]] |
− | * [[PWY- | + | ** '''10''' reactions found over '''11''' reactions in the full pathway |
− | ** '''1''' reactions found over ''' | + | * [[P341-PWY]] |
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY66-399]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-1042]] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6142]] | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7003]] | ||
+ | ** '''8''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6886]] | ||
+ | ** '''8''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6901]] | ||
+ | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7124]] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5723]] | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7218]] | ||
+ | ** '''7''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6707]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6163]] | ||
+ | ** '''6''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[QUINATEDEG-PWY]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6416]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=436126}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=425411}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=58.388256 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=23}} |
Revision as of 11:08, 15 January 2021
Contents
Gene SJ13450
- transcription-direction:
- positive
- right-end-position:
- 436126
- left-end-position:
- 425411
- centisome-position:
- 58.388256
Organism(s) associated with this gene
Reaction(s) associated
- 2PGADEHYDRAT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- 3-DEHYDROQUINATE-DEHYDRATASE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- PWY-2221
- 6 reactions found over 9 reactions in the full pathway
- NPGLUCAT-PWY
- 4 reactions found over 9 reactions in the full pathway
- PWY-1622
- 6 reactions found over 13 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- P341-PWY
- 6 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- PWY66-399
- 11 reactions found over 12 reactions in the full pathway
- PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- PWY-7003
- 8 reactions found over 6 reactions in the full pathway
- PWY-6886
- 8 reactions found over 5 reactions in the full pathway
- PWY-6901
- 10 reactions found over 8 reactions in the full pathway
- PWY-7124
- 8 reactions found over 8 reactions in the full pathway
- PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- PWY-7218
- 7 reactions found over 4 reactions in the full pathway
- PWY-6707
- 1 reactions found over 3 reactions in the full pathway
- PWY-6163
- 6 reactions found over 5 reactions in the full pathway
- QUINATEDEG-PWY
- 1 reactions found over 3 reactions in the full pathway
- PWY-6416
- 1 reactions found over 3 reactions in the full pathway