Difference between revisions of "1.3.7.2-RXN"
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(Created page with "Category:reaction == Reaction RXN-16044 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.23 ec-2.3.1.23] == Reaction formula == * 1 CP...") |
(Created page with "Category:reaction == Reaction PROTOHEMEFERROCHELAT-RXN == * direction: ** reversible * common-name: ** ferrochelatase * ec-number: ** [http://enzyme.expasy.org/EC/4.99.1.1...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction PROTOHEMEFERROCHELAT-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
+ | * common-name: | ||
+ | ** ferrochelatase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.99.1.1 ec-4.99.1.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[FE+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ19310]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ19170]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: |
− | ** ''' | + | ** '''5''' reactions found over '''4''' reactions in the full pathway |
+ | * [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: ec-number=ec- | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584] |
− | {{#set: nb pathway associated= | + | * LIGAND-RXN: |
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P22830 P22830] | ||
+ | ** [http://www.uniprot.org/uniprot/P22315 P22315] | ||
+ | ** [http://www.uniprot.org/uniprot/P28602 P28602] | ||
+ | ** [http://www.uniprot.org/uniprot/Q05338 Q05338] | ||
+ | ** [http://www.uniprot.org/uniprot/P42043 P42043] | ||
+ | ** [http://www.uniprot.org/uniprot/P23871 P23871] | ||
+ | ** [http://www.uniprot.org/uniprot/P32396 P32396] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4] | ||
+ | ** [http://www.uniprot.org/uniprot/P56107 P56107] | ||
+ | ** [http://www.uniprot.org/uniprot/O67083 O67083] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5] | ||
+ | ** [http://www.uniprot.org/uniprot/P22600 P22600] | ||
+ | ** [http://www.uniprot.org/uniprot/P43868 P43868] | ||
+ | ** [http://www.uniprot.org/uniprot/P16622 P16622] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59735 Q59735] | ||
+ | ** [http://www.uniprot.org/uniprot/P43413 P43413] | ||
+ | ** [http://www.uniprot.org/uniprot/P54225 P54225] | ||
+ | ** [http://www.uniprot.org/uniprot/P42045 P42045] | ||
+ | ** [http://www.uniprot.org/uniprot/O64391 O64391] | ||
+ | ** [http://www.uniprot.org/uniprot/P42044 P42044] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=ferrochelatase}} | ||
+ | {{#set: ec-number=ec-4.99.1.1}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=3}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:22, 15 January 2021
Contents
Reaction PROTOHEMEFERROCHELAT-RXN
- direction:
- reversible
- common-name:
- ferrochelatase
- ec-number:
Reaction formula
- 1 PROTOHEME[c] + 2 PROTON[c] <=> 1 FE+2[c] + 1 PROTOPORPHYRIN_IX[c]
Gene(s) associated with this reaction
- Gene: SJ19310
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ19170
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
- 5 reactions found over 4 reactions in the full pathway
- HEMESYN2-PWY, heme b biosynthesis II (oxygen-independent):
- 3 reactions found over 4 reactions in the full pathway
- HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links