Difference between revisions of "PINA1th"

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(Created page with "Category:reaction == Reaction GLYOHMETRANS-RXN == * direction: ** reversible * common-name: ** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase * ec-number:...")
(Created page with "Category:reaction == Reaction PROPIONYL-COA-CARBOXY-RXN == * direction: ** reversible * common-name: ** propionyl-coa carboxylase * ec-number: ** [http://enzyme.expasy.org...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYOHMETRANS-RXN ==
+
== Reaction PROPIONYL-COA-CARBOXY-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
+
** propionyl-coa carboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1]
+
** [http://enzyme.expasy.org/EC/6.4.1.3 ec-6.4.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[PROPIONYL-COA]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[D-METHYL-MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03668]]
+
* Gene: [[SJ12870]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15530]]
+
* Gene: [[SJ08104]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
+
** '''8''' reactions found over '''18''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5743]], 3-hydroxypropanoate cycle:
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
+
** '''5''' reactions found over '''13''' reactions in the full pathway
−
** '''10''' reactions found over '''24''' reactions in the full pathway
+
* [[PROPIONMET-PWY]], propanoyl CoA degradation I:
−
* [[PWY-181]], photorespiration:
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-6728]], methylaspartate cycle:
−
* [[PWY-3661]], glycine betaine degradation I:
+
** '''11''' reactions found over '''19''' reactions in the full pathway
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
−
* [[PWY-2201]], folate transformations I:
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYSYN-PWY]], glycine biosynthesis I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-3661-1]], glycine betaine degradation II (mammalian):
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-2161]], folate polyglutamylation:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23723 23723]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01859 R01859]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P35623 P35623]
+
** [http://www.uniprot.org/uniprot/Q96CX0 Q96CX0]
−
** [http://www.uniprot.org/uniprot/P34898 P34898]
+
** [http://www.uniprot.org/uniprot/P07633 P07633]
−
** [http://www.uniprot.org/uniprot/P34899 P34899]
+
** [http://www.uniprot.org/uniprot/P05165 P05165]
−
** [http://www.uniprot.org/uniprot/P34896 P34896]
+
** [http://www.uniprot.org/uniprot/Q06101 Q06101]
−
** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
+
** [http://www.uniprot.org/uniprot/Q20676 Q20676]
−
** [http://www.uniprot.org/uniprot/P34897 P34897]
+
** [http://www.uniprot.org/uniprot/O24789 O24789]
−
** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
 
−
** [http://www.uniprot.org/uniprot/O23254 O23254]
 
−
** [http://www.uniprot.org/uniprot/O53441 O53441]
 
−
** [http://www.uniprot.org/uniprot/O08370 O08370]
 
−
** [http://www.uniprot.org/uniprot/P43844 P43844]
 
−
** [http://www.uniprot.org/uniprot/Q58992 Q58992]
 
−
** [http://www.uniprot.org/uniprot/O66776 O66776]
 
−
** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
 
−
** [http://www.uniprot.org/uniprot/P47634 P47634]
 
−
** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
 
−
** [http://www.uniprot.org/uniprot/P56089 P56089]
 
−
** [http://www.uniprot.org/uniprot/O53615 O53615]
 
−
** [http://www.uniprot.org/uniprot/O83349 O83349]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
 
−
** [http://www.uniprot.org/uniprot/O51547 O51547]
 
−
** [http://www.uniprot.org/uniprot/O84439 O84439]
 
−
** [http://www.uniprot.org/uniprot/P24531 P24531]
 
−
** [http://www.uniprot.org/uniprot/P39148 P39148]
 
−
** [http://www.uniprot.org/uniprot/P24060 P24060]
 
−
** [http://www.uniprot.org/uniprot/P37292 P37292]
 
−
** [http://www.uniprot.org/uniprot/P34895 P34895]
 
−
** [http://www.uniprot.org/uniprot/P34894 P34894]
 
−
** [http://www.uniprot.org/uniprot/P49357 P49357]
 
−
** [http://www.uniprot.org/uniprot/P49358 P49358]
 
−
** [http://www.uniprot.org/uniprot/P50433 P50433]
 
−
** [http://www.uniprot.org/uniprot/P37291 P37291]
 
−
** [http://www.uniprot.org/uniprot/P78011 P78011]
 
−
** [http://www.uniprot.org/uniprot/P77962 P77962]
 
−
** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
 
−
** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
 
−
** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
 
−
** [http://www.uniprot.org/uniprot/O23984 O23984]
 
−
** [http://www.uniprot.org/uniprot/P0A825 P0A825]
 
−
** [http://www.uniprot.org/uniprot/P07511 P07511]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase}}
+
{{#set: common-name=propionyl-coa carboxylase}}
−
{{#set: ec-number=ec-2.1.2.1}}
+
{{#set: ec-number=ec-6.4.1.3}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:26, 15 January 2021

Reaction PROPIONYL-COA-CARBOXY-RXN

  • direction:
    • reversible
  • common-name:
    • propionyl-coa carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-5743, 3-hydroxypropanoate cycle:
    • 5 reactions found over 13 reactions in the full pathway
  • PROPIONMET-PWY, propanoyl CoA degradation I:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial):
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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