Difference between revisions of "SJ14149"
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(Created page with "Category:gene == Gene SJ05668 == * transcription-direction: ** negative * right-end-position: ** 53337 * left-end-position: ** 42551 * centisome-position: ** 8.6312275...") |
(Created page with "Category:gene == Gene SJ13560 == * transcription-direction: ** positive * right-end-position: ** 188391 * left-end-position: ** 173065 * centisome-position: ** 51.871777...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ13560 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 188391 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 173065 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 51.871777 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | + | * [[F16ALDOLASE-RXN]] | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | * [[ | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[RXN-8631]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[PWY | + | * [[CALVIN-PWY]] |
− | ** ''' | + | ** '''12''' reactions found over '''13''' reactions in the full pathway |
− | * [[ | + | * [[GLUCONEO-PWY]] |
− | ** ''' | + | ** '''12''' reactions found over '''13''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7385]] |
− | ** '''7''' reactions found over ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
− | * [[ | + | * [[P341-PWY]] |
− | ** ''' | + | ** '''6''' reactions found over '''10''' reactions in the full pathway |
− | * [[PWY- | + | * [[GLYCOLYSIS]] |
− | ** ''' | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
− | * [[PWY- | + | * [[ANAGLYCOLYSIS-PWY]] |
− | ** ''' | + | ** '''10''' reactions found over '''11''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY66-399]] |
− | ** ''' | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-1042]] |
− | ** ''' | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
− | * [[PWY- | + | * [[SUCSYN-PWY]] |
− | ** ''' | + | ** '''6''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[P185-PWY]] |
− | ** ''' | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
− | * [[ | + | * [[PWY-1861]] |
− | ** ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-5484]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-6142]] | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY66-373]] | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
</div> | </div> | ||
− | {{#set: transcription-direction= | + | {{#set: transcription-direction=positive}} |
− | {{#set: right-end-position= | + | {{#set: right-end-position=188391}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=173065}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=51.871777 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=14}} |
Revision as of 08:20, 15 March 2021
Contents
Gene SJ13560
- transcription-direction:
- positive
- right-end-position:
- 188391
- left-end-position:
- 173065
- centisome-position:
- 51.871777
Organism(s) associated with this gene
Reaction(s) associated
- F16ALDOLASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-8631
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- CALVIN-PWY
- 12 reactions found over 13 reactions in the full pathway
- GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- PWY-7385
- 7 reactions found over 9 reactions in the full pathway
- P341-PWY
- 6 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- PWY66-399
- 11 reactions found over 12 reactions in the full pathway
- PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- SUCSYN-PWY
- 6 reactions found over 7 reactions in the full pathway
- P185-PWY
- 11 reactions found over 12 reactions in the full pathway
- PWY-1861
- 7 reactions found over 9 reactions in the full pathway
- PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- PWY66-373
- 3 reactions found over 5 reactions in the full pathway