Difference between revisions of "SJ09367"
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(Created page with "Category:gene == Gene SJ01769 == * transcription-direction: ** negative * right-end-position: ** 101702 * left-end-position: ** 91920 * centisome-position: ** 62.95114...") |
(Created page with "Category:gene == Gene SJ09367 == * transcription-direction: ** positive * right-end-position: ** 440879 * left-end-position: ** 428049 * centisome-position: ** 52.15931...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ09367 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 440879 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 428049 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 52.15931 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[RXN-10642]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | + | * [[UROGENDECARBOX-RXN]] | |
− | |||
− | *** source: [[ | ||
− | * [[ | ||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | * [[HEMESYN2-PWY]] |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY0-1415]] |
− | ** ''' | + | ** '''5''' reactions found over '''n.a''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7766]] |
− | ** ''' | + | ** '''3''' reactions found over '''5''' reactions in the full pathway |
− | * [[ | + | * [[CHLOROPHYLL-SYN]] |
− | ** ''' | + | ** '''6''' reactions found over '''9''' reactions in the full pathway |
− | * [[PWY- | + | * [[HEME-BIOSYNTHESIS-II]] |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5531]] |
− | ** ''' | + | ** '''4''' reactions found over '''9''' reactions in the full pathway |
− | {{#set: transcription-direction= | + | * [[PWY-7159]] |
− | {{#set: right-end-position= | + | ** '''5''' reactions found over '''9''' reactions in the full pathway |
− | {{#set: left-end-position= | + | {{#set: transcription-direction=positive}} |
− | {{#set: centisome-position= | + | {{#set: right-end-position=440879}} |
+ | {{#set: left-end-position=428049}} | ||
+ | {{#set: centisome-position=52.15931 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Latest revision as of 11:02, 18 March 2021
Contents
Gene SJ09367
- transcription-direction:
- positive
- right-end-position:
- 440879
- left-end-position:
- 428049
- centisome-position:
- 52.15931
Organism(s) associated with this gene
Reaction(s) associated
- RXN-10642
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- UROGENDECARBOX-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- HEMESYN2-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY0-1415
- 5 reactions found over n.a reactions in the full pathway
- PWY-7766
- 3 reactions found over 5 reactions in the full pathway
- CHLOROPHYLL-SYN
- 6 reactions found over 9 reactions in the full pathway
- HEME-BIOSYNTHESIS-II
- 4 reactions found over 4 reactions in the full pathway
- PWY-5531
- 4 reactions found over 9 reactions in the full pathway
- PWY-7159
- 5 reactions found over 9 reactions in the full pathway