Difference between revisions of "SJ08953"
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(Created page with "Category:gene == Gene SJ04180 == * transcription-direction: ** positive * right-end-position: ** 309446 * left-end-position: ** 302294 * centisome-position: ** 58.564587...") |
(Created page with "Category:gene == Gene SJ08953 == * transcription-direction: ** negative * right-end-position: ** 119860 * left-end-position: ** 116617 * centisome-position: ** 27.213707...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ08953 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 119860 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 116617 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 27.213707 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
| − | {{#set: right-end-position= | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: left-end-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: centisome-position= | + | * [[GLYOXIII-RXN]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[HPPD]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-10815]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | * [[PWY-7432]] | ||
| + | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[TYRFUMCAT-PWY]] | ||
| + | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-1581]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-1422]] | ||
| + | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-6318]] | ||
| + | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=119860}} | ||
| + | {{#set: left-end-position=116617}} | ||
| + | {{#set: centisome-position=27.213707 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| + | {{#set: nb pathway associated=5}} | ||
Latest revision as of 11:07, 18 March 2021
Contents
Gene SJ08953
- transcription-direction:
- negative
- right-end-position:
- 119860
- left-end-position:
- 116617
- centisome-position:
- 27.213707
Organism(s) associated with this gene
Reaction(s) associated
- 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GLYOXIII-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- HPPD
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-10815
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7432
- 3 reactions found over 2 reactions in the full pathway
- TYRFUMCAT-PWY
- 2 reactions found over 5 reactions in the full pathway
- PWY-1581
- 3 reactions found over 3 reactions in the full pathway
- PWY-1422
- 5 reactions found over 7 reactions in the full pathway
- PWY-6318
- 4 reactions found over 9 reactions in the full pathway
