Difference between revisions of "SJ08749"
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(Created page with "Category:gene == Gene SJ10266 == * transcription-direction: ** positive * right-end-position: ** 167142 * left-end-position: ** 162212 * centisome-position: ** 41.146954...") |
(Created page with "Category:gene == Gene SJ08749 == * transcription-direction: ** negative * right-end-position: ** 31685 * left-end-position: ** 9850 * centisome-position: ** 19.793425...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ08749 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 31685 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 9850 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 19.793425 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[ISOCITDEH-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-8642]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-9951]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** ''' | + | * [[PWY-6549]] |
− | * [[PWY- | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-7268]] |
− | * [[PWY- | + | ** '''4''' reactions found over '''5''' reactions in the full pathway |
− | ** ''' | + | * [[P105-PWY]] |
− | {{#set: transcription-direction= | + | ** '''10''' reactions found over '''9''' reactions in the full pathway |
− | {{#set: right-end-position= | + | * [[TCA]] |
− | {{#set: left-end-position= | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
− | {{#set: centisome-position= | + | * [[REDCITCYC]] |
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7254]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]] | ||
+ | ** '''10''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5913]] | ||
+ | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[P23-PWY]] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7124]] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6728]] | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=31685}} | ||
+ | {{#set: left-end-position=9850}} | ||
+ | {{#set: centisome-position=19.793425 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=12}} |
Latest revision as of 11:08, 18 March 2021
Contents
Gene SJ08749
- transcription-direction:
- negative
- right-end-position:
- 31685
- left-end-position:
- 9850
- centisome-position:
- 19.793425
Organism(s) associated with this gene
Reaction(s) associated
- ISOCITDEH-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-8642
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-9951
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-7268
- 4 reactions found over 5 reactions in the full pathway
- P105-PWY
- 10 reactions found over 9 reactions in the full pathway
- TCA
- 9 reactions found over 10 reactions in the full pathway
- REDCITCYC
- 5 reactions found over 9 reactions in the full pathway
- PWY-7254
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969
- 10 reactions found over 9 reactions in the full pathway
- PWY-5913
- 10 reactions found over 8 reactions in the full pathway
- FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWY-7124
- 8 reactions found over 8 reactions in the full pathway
- PWY-6728
- 11 reactions found over 19 reactions in the full pathway