Difference between revisions of "GDPMANDEHYDRA-RXN"
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(Created page with "Category:reaction == Reaction RXN-1382 == * direction: ** reversible * common-name: ** l-serine-phosphatidylethanolamine phosphatidyltransferase * ec-number: ** [http://en...") |
(Created page with "Category:reaction == Reaction GDPMANDEHYDRA-RXN == * direction: ** left-to-right * common-name: ** gdp-mannose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.org/EC...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction GDPMANDEHYDRA-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** gdp-mannose 4,6-dehydratase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/4.2.1.47 ec-4.2.1.47] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ04008]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ21655]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): |
− | ** '''1''' reactions found over '''1''' reactions in the full pathway | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
− | * [[ | + | * [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: |
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: |
− | ** '''1''' reactions found over ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
+ | * [[PWY-5739]], GDP-D-perosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7573]], GDP-mycosamine biosynthesis: | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-5740]], GDP-L-colitose biosynthesis: | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * METANETX-RXN : MNXR100377 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23821 23821] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/Q84439 Q84439] |
− | {{#set: ec-number=ec-2. | + | {{#set: direction=left-to-right}} |
− | {{#set: nb gene associated= | + | {{#set: common-name=gdp-mannose 4,6-dehydratase}} |
− | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-4.2.1.47}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb gene associated=2}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: nb pathway associated=6}} |
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:18, 18 March 2021
Contents
Reaction GDPMANDEHYDRA-RXN
- direction:
- left-to-right
- common-name:
- gdp-mannose 4,6-dehydratase
- ec-number:
Reaction formula
- 1 GDP-MANNOSE[c] => 1 GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ04008
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ21655
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose):
- 2 reactions found over 3 reactions in the full pathway
- GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis:
- 1 reactions found over 2 reactions in the full pathway
- PWY-5738, GDP-6-deoxy-D-talose biosynthesis:
- 1 reactions found over 2 reactions in the full pathway
- PWY-5739, GDP-D-perosamine biosynthesis:
- 1 reactions found over 2 reactions in the full pathway
- PWY-7573, GDP-mycosamine biosynthesis:
- 1 reactions found over 3 reactions in the full pathway
- PWY-5740, GDP-L-colitose biosynthesis:
- 1 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links