Difference between revisions of "UDPGLUCEPIM-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction QUINOPRIBOTRANS-RXN == * direction: ** left-to-right * common-name: ** quinolinate phosphoribosyltransferase (decarboxylating) ** nicotinate-...") |
(Created page with "Category:reaction == Reaction UDPGLUCEPIM-RXN == * direction: ** reversible * common-name: ** udp-glucose 4-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.2...") |
||
(One intermediate revision by one other user not shown) | |||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction UDPGLUCEPIM-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** udp-glucose 4-epimerase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2] |
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ16452]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
− | |||
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | + | * Gene: [[SJ19552]] | |
− | * Gene: [[ | ||
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ17935]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6317]], D-galactose degradation I (Leloir pathway): |
− | ** ''' | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7344]], UDP-α-D-galactose biosynthesis: |
− | ** '''6''' reactions found over ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
− | * [[PWY- | + | * [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: |
− | ** ''' | + | ** '''6''' reactions found over '''1''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: |
− | ** '''3''' reactions found over ''' | + | ** '''1''' reactions found over '''18''' reactions in the full pathway |
+ | * [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: | ||
+ | ** '''5''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY66-422]]: | ||
+ | ** '''5''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | * [[PWY-3821]], D-galactose detoxification: | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6527]], stachyose degradation: | ||
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR143428 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22171 22171] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P35673 P35673] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P22715 P22715] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P21977 P21977] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P24325 P24325] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q57664 Q57664] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/P55180 P55180] |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3] |
− | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/P56997 P56997] |
+ | ** [http://www.uniprot.org/uniprot/Q59083 Q59083] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44016 Q44016] | ||
+ | ** [http://www.uniprot.org/uniprot/Q45291 Q45291] | ||
+ | ** [http://www.uniprot.org/uniprot/P96995 P96995] | ||
+ | ** [http://www.uniprot.org/uniprot/P45602 P45602] | ||
+ | ** [http://www.uniprot.org/uniprot/P18645 P18645] | ||
+ | ** [http://www.uniprot.org/uniprot/P26503 P26503] | ||
+ | ** [http://www.uniprot.org/uniprot/P40801 P40801] | ||
+ | ** [http://www.uniprot.org/uniprot/Q05026 Q05026] | ||
+ | ** [http://www.uniprot.org/uniprot/P56985 P56985] | ||
+ | ** [http://www.uniprot.org/uniprot/Q51148 Q51148] | ||
+ | ** [http://www.uniprot.org/uniprot/Q56093 Q56093] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42605 Q42605] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60109 Q60109] | ||
+ | ** [http://www.uniprot.org/uniprot/P72903 P72903] | ||
+ | ** [http://www.uniprot.org/uniprot/P72915 P72915] | ||
+ | ** [http://www.uniprot.org/uniprot/O66256 O66256] | ||
+ | ** [http://www.uniprot.org/uniprot/O64749 O64749] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43070 Q43070] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7] | ||
+ | ** [http://www.uniprot.org/uniprot/O65780 O65780] | ||
+ | ** [http://www.uniprot.org/uniprot/O65781 O65781] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0] | ||
+ | ** [http://www.uniprot.org/uniprot/P04397 P04397] | ||
+ | ** [http://www.uniprot.org/uniprot/P09147 P09147] | ||
+ | ** [http://www.uniprot.org/uniprot/P13226 P13226] | ||
+ | ** [http://www.uniprot.org/uniprot/P09609 P09609] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=udp-glucose 4-epimerase}} | ||
+ | {{#set: ec-number=ec-5.1.3.2}} | ||
{{#set: nb gene associated=3}} | {{#set: nb gene associated=3}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:19, 18 March 2021
Contents
Reaction UDPGLUCEPIM-RXN
- direction:
- reversible
- common-name:
- udp-glucose 4-epimerase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ16452
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ19552
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ17935
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6317, D-galactose degradation I (Leloir pathway):
- 5 reactions found over 5 reactions in the full pathway
- PWY-7344, UDP-α-D-galactose biosynthesis:
- 1 reactions found over 1 reactions in the full pathway
- COLANSYN-PWY, colanic acid building blocks biosynthesis:
- 6 reactions found over 1 reactions in the full pathway
- PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis:
- 1 reactions found over 18 reactions in the full pathway
- PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis:
- 5 reactions found over 2 reactions in the full pathway
- PWY66-422:
- 5 reactions found over n.a reactions in the full pathway
- PWY-3821, D-galactose detoxification:
- 3 reactions found over 3 reactions in the full pathway
- PWY-6527, stachyose degradation:
- 7 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR143428
- RHEA:
- LIGAND-RXN:
- UNIPROT: