Difference between revisions of "SERINE--TRNA-LIGASE-RXN"
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(Created page with "Category:reaction == Reaction RXN-16619 == * direction: ** left-to-right * common-name: ** (3r,5z)-3-hydroxy-tetradeca-5-enoyl-[acp] dehydratase * ec-number: ** [http://en...") |
(Created page with "Category:reaction == Reaction SERINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** l-serine:trnaser ligase (amp-forming) * ec-number: ** [http://enzy...") |
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(3 intermediate revisions by 2 users not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction SERINE--TRNA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** ( | + | ** l-serine:trnaser ligase (amp-forming) |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[SER-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ14143]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ07311]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[TRNA-CHARGING-PWY]], tRNA charging: |
− | ** ''' | + | ** '''21''' reactions found over '''21''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR123879 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12293 12293] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5] | ||
+ | ** [http://www.uniprot.org/uniprot/O51244 O51244] | ||
+ | ** [http://www.uniprot.org/uniprot/O66647 O66647] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58477 Q58477] | ||
+ | ** [http://www.uniprot.org/uniprot/O27194 O27194] | ||
+ | ** [http://www.uniprot.org/uniprot/O84734 O84734] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X199 Q9X199] | ||
+ | ** [http://www.uniprot.org/uniprot/P47251 P47251] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77] | ||
+ | ** [http://www.uniprot.org/uniprot/O83653 O83653] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736] | ||
+ | ** [http://www.uniprot.org/uniprot/P49591 P49591] | ||
+ | ** [http://www.uniprot.org/uniprot/P56458 P56458] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2] | ||
+ | ** [http://www.uniprot.org/uniprot/P43833 P43833] | ||
+ | ** [http://www.uniprot.org/uniprot/P26636 P26636] | ||
+ | ** [http://www.uniprot.org/uniprot/P39919 P39919] | ||
+ | ** [http://www.uniprot.org/uniprot/P37464 P37464] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39230 Q39230] | ||
+ | ** [http://www.uniprot.org/uniprot/P75107 P75107] | ||
+ | ** [http://www.uniprot.org/uniprot/P73201 P73201] | ||
+ | ** [http://www.uniprot.org/uniprot/O82108 O82108] | ||
+ | ** [http://www.uniprot.org/uniprot/O82110 O82110] | ||
+ | ** [http://www.uniprot.org/uniprot/O81983 O81983] | ||
+ | ** [http://www.uniprot.org/uniprot/O45887 O45887] | ||
+ | ** [http://www.uniprot.org/uniprot/O14018 O14018] | ||
+ | ** [http://www.uniprot.org/uniprot/P54221 P54221] | ||
+ | ** [http://www.uniprot.org/uniprot/P07284 P07284] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name=( | + | {{#set: common-name=l-serine:trnaser ligase (amp-forming)}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-6.1.1.11}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=2}} |
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction SERINE--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- l-serine:trnaser ligase (amp-forming)
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ14143
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ07311
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging:
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links