Difference between revisions of "ORNDECARBOX-RXN"
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(Created page with "Category:reaction == Reaction RNA-LIGASE-ATP-RXN == * direction: ** left-to-right * common-name: ** rna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.3 e...") |
(Created page with "Category:reaction == Reaction ORNDECARBOX-RXN == * direction: ** left-to-right * common-name: ** ornithine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1...") |
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(4 intermediate revisions by 3 users not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction ORNDECARBOX-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** ornithine decarboxylase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.1.1.17 ec-4.1.1.17] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[L-ORNITHINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PUTRESCINE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ13198]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ16944]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-46]], putrescine biosynthesis III: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6305]], superpathway of putrescine biosynthesis: | ||
+ | ** '''4''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | * [[ORNDEG-PWY]], superpathway of ornithine degradation: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR102209 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22965 22965] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P24169 P24169] |
+ | ** [http://www.uniprot.org/uniprot/P27121 P27121] | ||
+ | ** [http://www.uniprot.org/uniprot/P27116 P27116] | ||
+ | ** [http://www.uniprot.org/uniprot/P27120 P27120] | ||
+ | ** [http://www.uniprot.org/uniprot/P43099 P43099] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X2I6 Q9X2I6] | ||
+ | ** [http://www.uniprot.org/uniprot/P08432 P08432] | ||
+ | ** [http://www.uniprot.org/uniprot/P27118 P27118] | ||
+ | ** [http://www.uniprot.org/uniprot/P11926 P11926] | ||
+ | ** [http://www.uniprot.org/uniprot/P14019 P14019] | ||
+ | ** [http://www.uniprot.org/uniprot/P00860 P00860] | ||
+ | ** [http://www.uniprot.org/uniprot/P09057 P09057] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9TZZ6 Q9TZZ6] | ||
+ | ** [http://www.uniprot.org/uniprot/P44317 P44317] | ||
+ | ** [http://www.uniprot.org/uniprot/O66940 O66940] | ||
+ | ** [http://www.uniprot.org/uniprot/P27119 P27119] | ||
+ | ** [http://www.uniprot.org/uniprot/P49725 P49725] | ||
+ | ** [http://www.uniprot.org/uniprot/P50134 P50134] | ||
+ | ** [http://www.uniprot.org/uniprot/P93351 P93351] | ||
+ | ** [http://www.uniprot.org/uniprot/P93357 P93357] | ||
+ | ** [http://www.uniprot.org/uniprot/O15696 O15696] | ||
+ | ** [http://www.uniprot.org/uniprot/Q84527 Q84527] | ||
+ | ** [http://www.uniprot.org/uniprot/P41931 P41931] | ||
+ | ** [http://www.uniprot.org/uniprot/O69865 O69865] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=ornithine decarboxylase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-4.1.1.17}} |
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction ORNDECARBOX-RXN
- direction:
- left-to-right
- common-name:
- ornithine decarboxylase
- ec-number:
Reaction formula
- 1 L-ORNITHINE[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 PUTRESCINE[c]
Gene(s) associated with this reaction
- Gene: SJ13198
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16944
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-46, putrescine biosynthesis III:
- 1 reactions found over 2 reactions in the full pathway
- PWY-6305, superpathway of putrescine biosynthesis:
- 4 reactions found over n.a reactions in the full pathway
- ORNDEG-PWY, superpathway of ornithine degradation:
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links