Difference between revisions of "SJ02871"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ22083 == * transcription-direction: ** positive * right-end-position: ** 60995 * left-end-position: ** 56655 * centisome-position: ** 9.657245...") |
(Created page with "Category:gene == Gene SJ08066 == * transcription-direction: ** negative * right-end-position: ** 27668 * left-end-position: ** 7570 * centisome-position: ** 12.943933...") |
||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ08066 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 27668 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 7570 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 12.943933 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[4.3.1.17-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-15122]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-15125]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[THREDEHYD-RXN]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | * [[ILEUSYN-PWY]] |
− | ** ''' | + | ** '''4''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5437]] |
− | ** ''' | + | ** '''1''' reactions found over '''6''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5826]] |
− | ** ''' | + | ** '''2''' reactions found over '''14''' reactions in the full pathway |
− | * [[PWY- | + | * [[SERDEG-PWY]] |
− | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
− | {{#set: transcription-direction= | + | * [[PWY-5497]] |
− | {{#set: right-end-position= | + | ** '''10''' reactions found over '''24''' reactions in the full pathway |
− | {{#set: left-end-position= | + | * [[PWY-3661]] |
− | {{#set: centisome-position= | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY66-428]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=27668}} | ||
+ | {{#set: left-end-position=7570}} | ||
+ | {{#set: centisome-position=12.943933 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Revision as of 14:21, 26 August 2019
Contents
Gene SJ08066
- transcription-direction:
- negative
- right-end-position:
- 27668
- left-end-position:
- 7570
- centisome-position:
- 12.943933
Organism(s) associated with this gene
Reaction(s) associated
- 4.3.1.17-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
- RXN-15122
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-15125
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- THREDEHYD-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- ILEUSYN-PWY
- 4 reactions found over 7 reactions in the full pathway
- PWY-5437
- 1 reactions found over 6 reactions in the full pathway
- PWY-5826
- 2 reactions found over 14 reactions in the full pathway
- SERDEG-PWY
- 1 reactions found over 3 reactions in the full pathway
- PWY-5497
- 10 reactions found over 24 reactions in the full pathway
- PWY-3661
- 3 reactions found over 7 reactions in the full pathway
- PWY66-428
- 2 reactions found over 2 reactions in the full pathway