Difference between revisions of "SJ20270"
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(Created page with "Category:gene == Gene SJ07706 == * transcription-direction: ** positive * right-end-position: ** 42505 * left-end-position: ** 7827 * centisome-position: ** 12.470127...") |
(Created page with "Category:gene == Gene SJ05660 == * transcription-direction: ** positive * right-end-position: ** 25978 * left-end-position: ** 384 * centisome-position: ** 7.78922100e-2 =...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ05660 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 25978 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 384 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 7.78922100e-2 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[RXN-11519]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-11520]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-11521]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12615]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-7682]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[RXN | + | * [[RXN0-901]] |
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[XANTHINE-OXIDASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''6''' reactions found over ''' | + | * [[PWY-6632]] |
+ | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6596]] | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[P164-PWY]] | ||
+ | ** '''6''' reactions found over '''17''' reactions in the full pathway | ||
+ | * [[SALVADEHYPOX-PWY]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5497]] | ||
+ | ** '''10''' reactions found over '''24''' reactions in the full pathway | ||
+ | * [[PWY-6606]] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6607]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6999]] | ||
+ | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6608]] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6538]] | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5695]] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=25978}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=384}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=7.78922100e-2}} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=11}} |
Revision as of 14:22, 26 August 2019
Contents
Gene SJ05660
- transcription-direction:
- positive
- right-end-position:
- 25978
- left-end-position:
- 384
- centisome-position:
- 7.78922100e-2
Organism(s) associated with this gene
Reaction(s) associated
- RXN-11519
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-11520
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-11521
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12615
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7682
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN0-901
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- XANTHINE-OXIDASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6632
- 4 reactions found over 3 reactions in the full pathway
- PWY-6596
- 7 reactions found over 8 reactions in the full pathway
- P164-PWY
- 6 reactions found over 17 reactions in the full pathway
- SALVADEHYPOX-PWY
- 5 reactions found over 5 reactions in the full pathway
- PWY-5497
- 10 reactions found over 24 reactions in the full pathway
- PWY-6606
- 4 reactions found over 4 reactions in the full pathway
- PWY-6607
- 3 reactions found over 4 reactions in the full pathway
- PWY-6999
- 2 reactions found over 9 reactions in the full pathway
- PWY-6608
- 4 reactions found over 4 reactions in the full pathway
- PWY-6538
- 2 reactions found over 7 reactions in the full pathway
- PWY-5695
- 4 reactions found over 4 reactions in the full pathway