Difference between revisions of "CPD-281"
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(Created page with "Category:gene == Gene SJ21941 == * transcription-direction: ** positive * right-end-position: ** 107548 * left-end-position: ** 105836 * centisome-position: ** 57.7068...") |
(Created page with "Category:gene == Gene SJ16950 == * transcription-direction: ** negative * right-end-position: ** 521708 * left-end-position: ** 506485 * centisome-position: ** 74.264336...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ16950 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 521708 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 506485 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 74.264336 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[4-NITROPHENYLPHOSPHATASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[F16BDEPHOS-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[SUGAR-PHOSPHATASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | * [[P185-PWY]] |
− | ** ''' | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
− | {{#set: transcription-direction= | + | * [[PWY66-399]] |
− | {{#set: right-end-position= | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
− | {{#set: left-end-position= | + | * [[SUCSYN-PWY]] |
− | {{#set: centisome-position= | + | ** '''6''' reactions found over '''7''' reactions in the full pathway |
+ | * [[CALVIN-PWY]] | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]] | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5484]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=521708}} | ||
+ | {{#set: left-end-position=506485}} | ||
+ | {{#set: centisome-position=74.264336 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Revision as of 14:23, 26 August 2019
Contents
Gene SJ16950
- transcription-direction:
- negative
- right-end-position:
- 521708
- left-end-position:
- 506485
- centisome-position:
- 74.264336
Organism(s) associated with this gene
Reaction(s) associated
- 4-NITROPHENYLPHOSPHATASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- F16BDEPHOS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- SEDOHEPTULOSE-BISPHOSPHATASE-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- SUGAR-PHOSPHATASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- P185-PWY
- 11 reactions found over 12 reactions in the full pathway
- PWY66-399
- 11 reactions found over 12 reactions in the full pathway
- SUCSYN-PWY
- 6 reactions found over 7 reactions in the full pathway
- CALVIN-PWY
- 12 reactions found over 13 reactions in the full pathway
- GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway