Difference between revisions of "N-FORMYLKYNURENINE"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12848 RXN-12848] == * direction: ** left-to-right * common-name: ** cholest-4-en-3-one 26-monoo...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** left-to-right * common-name: ** malate synthase * ec-numb...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** malate synthase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.3.3.9 ec-2.3.3.9] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ14150]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] |
− | ** ''' | + | ** '''10''' reactions found over '''11''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] |
− | ** '''6''' reactions found over ''' | + | ** '''10''' reactions found over '''12''' reactions in the full pathway |
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7294]], D-xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295] | ||
+ | ** '''1''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7854]], crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7854 PWY-7854] | ||
+ | ** '''1''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18182 18182] | ||
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472] |
− | * | + | * UNIPROT: |
− | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/P42450 P42450] |
+ | ** [http://www.uniprot.org/uniprot/Q02216 Q02216] | ||
+ | ** [http://www.uniprot.org/uniprot/P28344 P28344] | ||
+ | ** [http://www.uniprot.org/uniprot/P28345 P28345] | ||
+ | ** [http://www.uniprot.org/uniprot/P30952 P30952] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43827 Q43827] | ||
+ | ** [http://www.uniprot.org/uniprot/P21826 P21826] | ||
+ | ** [http://www.uniprot.org/uniprot/P37330 P37330] | ||
+ | ** [http://www.uniprot.org/uniprot/P17432 P17432] | ||
+ | ** [http://www.uniprot.org/uniprot/P17815 P17815] | ||
+ | ** [http://www.uniprot.org/uniprot/P08997 P08997] | ||
+ | ** [http://www.uniprot.org/uniprot/P21360 P21360] | ||
+ | ** [http://www.uniprot.org/uniprot/P08216 P08216] | ||
+ | ** [http://www.uniprot.org/uniprot/P13244 P13244] | ||
+ | ** [http://www.uniprot.org/uniprot/P49081 P49081] | ||
+ | ** [http://www.uniprot.org/uniprot/P45458 P45458] | ||
+ | ** [http://www.uniprot.org/uniprot/O32913 O32913] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=malate synthase}} |
+ | {{#set: ec-number=ec-2.3.3.9}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 14:25, 26 August 2019
Contents
Reaction MALSYN-RXN
- direction:
- left-to-right
- common-name:
- malate synthase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ14150
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
- 6 reactions found over 6 reactions in the full pathway
- PWY-7294, D-xylose degradation IV: PWY-7294
- 1 reactions found over 7 reactions in the full pathway
- PWY-7295, L-arabinose degradation IV: PWY-7295
- 1 reactions found over 8 reactions in the full pathway
- PWY-7854, crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered): PWY-7854
- 1 reactions found over 14 reactions in the full pathway
- PWY-7118, chitin degradation to ethanol: PWY-7118
- 5 reactions found over 6 reactions in the full pathway
- GLYOXDEG-PWY, glycolate and glyoxylate degradation II: GLYOXDEG-PWY
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links