Difference between revisions of "Palmitoyl-lipid"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** left-to-right * common-name: ** phosphoglycolate phosphatase *...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12070 RXN-12070] == * direction: ** left-to-right * common-name: ** 2-hydroxy-6-oxonona-2,4-die...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12070 RXN-12070] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoglycolate phosphatase
+
** 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.18 ec-3.1.3.18]
+
** [http://enzyme.expasy.org/EC/3.7.1.14 ec-3.7.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-67]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLYCOLLATE]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[CPD0-2184]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-14447]][c] '''+''' 1 [[FUM]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10617]]
+
* Gene: [[SJ20125]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04928]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
+
* [[PWY-6690]], cinnamate and 3-hydroxycinnamate degradation to 2-hydroxypentadienoate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6690 PWY-6690]
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14370 14370]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25047 25047]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06789 R06789]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P40852 P40852]
 
−
** [http://www.uniprot.org/uniprot/P40853 P40853]
 
−
** [http://www.uniprot.org/uniprot/P32662 P32662]
 
−
** [http://www.uniprot.org/uniprot/P73525 P73525]
 
−
** [http://www.uniprot.org/uniprot/O33512 O33512]
 
−
** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphoglycolate phosphatase}}
+
{{#set: common-name=2-hydroxy-6-oxonona-2,4-dienedioate hydrolase}}
−
{{#set: ec-number=ec-3.1.3.18}}
+
{{#set: ec-number=ec-3.7.1.14}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction RXN-12070

  • direction:
    • left-to-right
  • common-name:
    • 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6690, cinnamate and 3-hydroxycinnamate degradation to 2-hydroxypentadienoate: PWY-6690
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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