Difference between revisions of "IMDHT LPAREN 3c2hmp RPAREN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4577/NAD/WATER.79. RXN-13...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] == * direction: ** reversible * common-name: ** isocitrate lyase...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4577/NAD/WATER.79. RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADH/OXYGEN-MOLECULE/PROTON//CPD-4577/NAD/WATER.79.] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** isocitrate lyase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[44-DIMETHYL-824-CHOLESTADIENOL]][c] '''+''' 3.0 [[NADH]][c] '''+''' 3.0 [[OXYGEN-MOLECULE]][c] '''+''' 2.0 [[PROTON]][c] '''=>''' 1.0 [[CPD-4577]][c] '''+''' 3.0 [[NAD]][c] '''+''' 4.0 [[WATER]][c]
+
* 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ10623]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02830]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05932]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05283]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: nb gene associated=0}}
+
* RHEA:
−
{{#set: nb pathway associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13248 13248]
−
{{#set: reconstruction category=gap-filling}}
+
* PIR:
−
{{#set: reconstruction tool=meneco}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
−
{{#set: reconstruction comment=added for gapfilling}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P28467 P28467]
 +
** [http://www.uniprot.org/uniprot/P42449 P42449]
 +
** [http://www.uniprot.org/uniprot/P20699 P20699]
 +
** [http://www.uniprot.org/uniprot/O13439 O13439]
 +
** [http://www.uniprot.org/uniprot/P28299 P28299]
 +
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
 +
** [http://www.uniprot.org/uniprot/P46831 P46831]
 +
** [http://www.uniprot.org/uniprot/O24588 O24588]
 +
** [http://www.uniprot.org/uniprot/P49297 P49297]
 +
** [http://www.uniprot.org/uniprot/P45456 P45456]
 +
** [http://www.uniprot.org/uniprot/P45457 P45457]
 +
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
 +
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
 +
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
 +
** [http://www.uniprot.org/uniprot/P28240 P28240]
 +
** [http://www.uniprot.org/uniprot/P20014 P20014]
 +
** [http://www.uniprot.org/uniprot/P17069 P17069]
 +
** [http://www.uniprot.org/uniprot/P15479 P15479]
 +
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
 +
** [http://www.uniprot.org/uniprot/P25248 P25248]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=isocitrate lyase}}
 +
{{#set: ec-number=ec-4.1.3.1}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction ISOCIT-CLEAV-RXN

  • direction:
    • reversible
  • common-name:
    • isocitrate lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 10 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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