Difference between revisions of "RXN-14480"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] == * direction: ** left-to-right * common-name: ** all-trans-retinol 1...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] == * direction: ** left-to-right * common-name: ** adenylate kinase...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** adenylate kinase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.4.3 ec-2.7.4.3] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[AMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 2 [[ADP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ12510]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13446]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ01032]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ04502]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ18341]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ21099]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ21967]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ08159]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ20076]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13448]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ12499]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ04989]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ10682]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ14895]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ02240]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00789]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ15367]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ00793]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ08980]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219] | ||
+ | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P05081 P05081] | ||
+ | ** [http://www.uniprot.org/uniprot/P20425 P20425] | ||
+ | ** [http://www.uniprot.org/uniprot/P08166 P08166] | ||
+ | ** [http://www.uniprot.org/uniprot/P38372 P38372] | ||
+ | ** [http://www.uniprot.org/uniprot/O27699 O27699] | ||
+ | ** [http://www.uniprot.org/uniprot/O29581 O29581] | ||
+ | ** [http://www.uniprot.org/uniprot/O59443 O59443] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1] | ||
+ | ** [http://www.uniprot.org/uniprot/P58117 P58117] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8] | ||
+ | ** [http://www.uniprot.org/uniprot/P54819 P54819] | ||
+ | ** [http://www.uniprot.org/uniprot/O66490 O66490] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9] | ||
+ | ** [http://www.uniprot.org/uniprot/P49973 P49973] | ||
+ | ** [http://www.uniprot.org/uniprot/P24323 P24323] | ||
+ | ** [http://www.uniprot.org/uniprot/P47417 P47417] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7] | ||
+ | ** [http://www.uniprot.org/uniprot/P29410 P29410] | ||
+ | ** [http://www.uniprot.org/uniprot/P16304 P16304] | ||
+ | ** [http://www.uniprot.org/uniprot/P00570 P00570] | ||
+ | ** [http://www.uniprot.org/uniprot/P27142 P27142] | ||
+ | ** [http://www.uniprot.org/uniprot/P07170 P07170] | ||
+ | ** [http://www.uniprot.org/uniprot/P12115 P12115] | ||
+ | ** [http://www.uniprot.org/uniprot/P69441 P69441] | ||
+ | ** [http://www.uniprot.org/uniprot/P00568 P00568] | ||
+ | ** [http://www.uniprot.org/uniprot/P10772 P10772] | ||
+ | ** [http://www.uniprot.org/uniprot/P00571 P00571] | ||
+ | ** [http://www.uniprot.org/uniprot/P00569 P00569] | ||
+ | ** [http://www.uniprot.org/uniprot/P10251 P10251] | ||
+ | ** [http://www.uniprot.org/uniprot/P43417 P43417] | ||
+ | ** [http://www.uniprot.org/uniprot/P49974 P49974] | ||
+ | ** [http://www.uniprot.org/uniprot/P33107 P33107] | ||
+ | ** [http://www.uniprot.org/uniprot/P27143 P27143] | ||
+ | ** [http://www.uniprot.org/uniprot/P26364 P26364] | ||
+ | ** [http://www.uniprot.org/uniprot/P33075 P33075] | ||
+ | ** [http://www.uniprot.org/uniprot/P35140 P35140] | ||
+ | ** [http://www.uniprot.org/uniprot/P35141 P35141] | ||
+ | ** [http://www.uniprot.org/uniprot/P39068 P39068] | ||
+ | ** [http://www.uniprot.org/uniprot/P34346 P34346] | ||
+ | ** [http://www.uniprot.org/uniprot/P43188 P43188] | ||
+ | ** [http://www.uniprot.org/uniprot/P69344 P69344] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6] | ||
+ | ** [http://www.uniprot.org/uniprot/P49979 P49979] | ||
+ | ** [http://www.uniprot.org/uniprot/Q50299 Q50299] | ||
+ | ** [http://www.uniprot.org/uniprot/P43412 P43412] | ||
+ | ** [http://www.uniprot.org/uniprot/P72641 P72641] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=adenylate kinase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-2.7.4.3}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=19}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 14:26, 26 August 2019
Contents
Reaction ADENYL-KIN-RXN
- direction:
- left-to-right
- common-name:
- adenylate kinase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ12510
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ13446
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ01032
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ04502
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ18341
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ21099
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ21967
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ08159
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ20076
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13448
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12499
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ04989
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ10682
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ14895
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ02240
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00789
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15367
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00793
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ08980
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-7219, adenosine ribonucleotides de novo biosynthesis: PWY-7219
- 4 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P05081
- P20425
- P08166
- P38372
- O27699
- O29581
- O59443
- Q9YDD2
- Q9UZN1
- P58117
- Q9PHM8
- P54819
- O66490
- Q9V1V9
- P49973
- P24323
- P47417
- Q9HPA7
- P29410
- P16304
- P00570
- P27142
- P07170
- P12115
- P69441
- P00568
- P10772
- P00571
- P00569
- P10251
- P43417
- P49974
- P33107
- P27143
- P26364
- P33075
- P35140
- P35141
- P39068
- P34346
- P43188
- P69344
- P0A0U6
- P49979
- Q50299
- P43412
- P72641