Difference between revisions of "SJ15676"
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(Created page with "Category:gene == Gene SJ10745 == * transcription-direction: ** negative * right-end-position: ** 72036 * left-end-position: ** 25068 * centisome-position: ** 6.5142655...") |
(Created page with "Category:gene == Gene SJ11687 == * transcription-direction: ** positive * right-end-position: ** 348307 * left-end-position: ** 338918 * centisome-position: ** 91.77557...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ11687 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 348307 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 338918 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 91.77557 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[RIBULP3EPIM-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
− | {{#set: right-end-position= | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | {{#set: left-end-position= | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | {{#set: centisome-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | == Pathway(s) associated == | ||
+ | * [[PWY-1861]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P21-PWY]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[NONOXIPENT-PWY]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5723]] | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P124-PWY]] | ||
+ | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[CALVIN-PWY]] | ||
+ | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[P122-PWY]] | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[P185-PWY]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | {{#set: transcription-direction=positive}} | ||
+ | {{#set: right-end-position=348307}} | ||
+ | {{#set: left-end-position=338918}} | ||
+ | {{#set: centisome-position=91.77557 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
{{#set: nb reaction associated=1}} | {{#set: nb reaction associated=1}} | ||
+ | {{#set: nb pathway associated=8}} |
Revision as of 09:26, 27 August 2019
Contents
Gene SJ11687
- transcription-direction:
- positive
- right-end-position:
- 348307
- left-end-position:
- 338918
- centisome-position:
- 91.77557
Organism(s) associated with this gene
Reaction(s) associated
- RIBULP3EPIM-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-1861
- 7 reactions found over 9 reactions in the full pathway
- P21-PWY
- 3 reactions found over 3 reactions in the full pathway
- NONOXIPENT-PWY
- 5 reactions found over 5 reactions in the full pathway
- PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- CALVIN-PWY
- 12 reactions found over 13 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- P185-PWY
- 11 reactions found over 12 reactions in the full pathway