Difference between revisions of "Cyclic-3-5-Nucleoside-Monophosphates"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ02471 == * transcription-direction: ** positive * right-end-position: ** 108786 * left-end-position: ** 102291 * centisome-position: ** 75.81772...") |
(Created page with "Category:gene == Gene SJ05644 == * transcription-direction: ** positive * right-end-position: ** 54943 * left-end-position: ** 39039 * centisome-position: ** 43.445213...") |
||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ05644 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 54943 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 39039 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 43.445213 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[ALCD19]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ALCDH_LPAREN_nadp_RPAREN_hi]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ALCDH_LPAREN_nadp_RPAREN_i]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ALCOHOL-DEHYDROGENASE-NADP+-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[ALDEHYDE-REDUCTASE-RXN]] |
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[GLUCURONATE-REDUCTASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[GLYCEROL-DEHYDROGENASE-NADP+-RXN]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[RXN-10717]] |
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12078]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12484]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14023]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14102]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-8772]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-8773]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | * [[PWY-5525]] | |
− | * [[ | + | ** '''2''' reactions found over '''5''' reactions in the full pathway |
− | ** | + | * [[PWY3DJ-35471]] |
− | |||
− | |||
− | |||
− | |||
− | * [[ | ||
− | |||
− | |||
** '''3''' reactions found over '''6''' reactions in the full pathway | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-6307]] |
− | |||
− | |||
** '''4''' reactions found over '''4''' reactions in the full pathway | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
− | * [[ | + | * [[PWY-6693]] |
− | ** '''1''' reactions found over ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7178]] |
− | ** ''' | + | ** '''1''' reactions found over '''4''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5515]] |
− | ** ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5516]] |
− | ** '''1''' reactions found over ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
− | |||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=54943}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=39039}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=43.445213 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=15}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Revision as of 09:28, 27 August 2019
Contents
Gene SJ05644
- transcription-direction:
- positive
- right-end-position:
- 54943
- left-end-position:
- 39039
- centisome-position:
- 43.445213
Organism(s) associated with this gene
Reaction(s) associated
- ALCD19
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ALCDH_LPAREN_nadp_RPAREN_hi
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ALCDH_LPAREN_nadp_RPAREN_i
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ALCOHOL-DEHYDROGENASE-NADP+-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- ALDEHYDE-REDUCTASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLUCURONATE-REDUCTASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLYCEROL-DEHYDROGENASE-NADP+-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-10717
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12078
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12484
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14023
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14102
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-8772
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-8773
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5525
- 2 reactions found over 5 reactions in the full pathway
- PWY3DJ-35471
- 3 reactions found over 6 reactions in the full pathway
- PWY-6307
- 4 reactions found over 4 reactions in the full pathway
- PWY-6693
- 1 reactions found over 3 reactions in the full pathway
- PWY-7178
- 1 reactions found over 4 reactions in the full pathway
- PWY-5515
- 2 reactions found over 3 reactions in the full pathway
- PWY-5516
- 1 reactions found over 1 reactions in the full pathway