Difference between revisions of "Benzenediols"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ12264 == * transcription-direction: ** positive * right-end-position: ** 190175 * left-end-position: ** 188719 * centisome-position: ** 52.403313...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRNUTRANSHYDROGEN-RXN PYRNUTRANSHYDROGEN-RXN] == * direction: ** left-to-right * common-name: ** n...")
Line 1: Line 1:
−
[[Category:gene]]
+
[[Category:reaction]]
−
== Gene SJ12264 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRNUTRANSHYDROGEN-RXN PYRNUTRANSHYDROGEN-RXN] ==
−
* transcription-direction:
+
* direction:
−
** positive
+
** left-to-right
−
* right-end-position:
+
* common-name:
−
** 190175
+
** nad(p)+ transhydrogenase (ab-specific)
−
* left-end-position:
+
** pyridine nucleotide transhydrogenase
−
** 188719
+
* ec-number:
−
* centisome-position:
+
** [http://enzyme.expasy.org/EC/1.6.1.2 ec-1.6.1.2]
−
** 52.403313   
+
** [http://enzyme.expasy.org/EC/1.6.1.3 ec-1.6.1.3]
−
== Organism(s) associated with this gene  ==
+
** [http://enzyme.expasy.org/EC/1.6.1.1 ec-1.6.1.1]
−
* [[S.japonica_carotenoid_curated]]
+
== Reaction formula ==
−
== Reaction(s) associated ==
+
* 1 [[NAD]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[NADP]][c]
−
* [[2.7.11.24-RXN]]
+
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ20208]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* [[PROTEIN-KINASE-RXN]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03777]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
{{#set: transcription-direction=positive}}
+
** Category: [[orthology]]
−
{{#set: right-end-position=190175}}
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
{{#set: left-end-position=188719}}
+
* Gene: [[SJ03718]]
−
{{#set: centisome-position=52.403313    }}
+
** Category: [[annotation]]
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
{{#set: nb reaction associated=2}}
+
* Gene: [[SJ20207]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20209]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03778]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13593]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10661]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08849]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 +
== Pathway(s)  ==
 +
* [[PWY-5083]], NAD/NADH phosphorylation and dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11692 11692]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00112 R00112]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JUR5 Q9JUR5]
 +
** [http://www.uniprot.org/uniprot/Q9JUR3 Q9JUR3]
 +
** [http://www.uniprot.org/uniprot/P11024 P11024]
 +
** [http://www.uniprot.org/uniprot/P07001 P07001]
 +
** [http://www.uniprot.org/uniprot/P0AB67 P0AB67]
 +
** [http://www.uniprot.org/uniprot/P43842 P43842]
 +
** [http://www.uniprot.org/uniprot/P43010 P43010]
 +
** [http://www.uniprot.org/uniprot/Q61941 Q61941]
 +
** [http://www.uniprot.org/uniprot/P73500 P73500]
 +
** [http://www.uniprot.org/uniprot/P73496 P73496]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=pyridine nucleotide transhydrogenase|nad(p)+ transhydrogenase (ab-specific)}}
 +
{{#set: ec-number=ec-1.6.1.1|ec-1.6.1.3|ec-1.6.1.2}}
 +
{{#set: nb gene associated=9}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}

Revision as of 09:28, 27 August 2019

Reaction PYRNUTRANSHYDROGEN-RXN

  • direction:
    • left-to-right
  • common-name:
    • nad(p)+ transhydrogenase (ab-specific)
    • pyridine nucleotide transhydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5083, NAD/NADH phosphorylation and dephosphorylation: PWY-5083
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=Benzenediols&oldid=34213"