Difference between revisions of "DIMETHYL-GLYCINE"

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(Created page with "Category:gene == Gene SJ05673 == * transcription-direction: ** negative * right-end-position: ** 60946 * left-end-position: ** 54941 * centisome-position: ** 11.144467...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.11-RXN 1.5.1.11-RXN] == * direction: ** left-to-right * common-name: ** d-octopine dehydrogen...")
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[[Category:gene]]
+
[[Category:reaction]]
== Gene SJ05673 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.11-RXN 1.5.1.11-RXN] ==
* transcription-direction:
+
* direction:
** negative
+
** left-to-right
* right-end-position:
+
* common-name:
** 60946
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** d-octopine dehydrogenase
* left-end-position:
+
* ec-number:
** 54941
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** [http://enzyme.expasy.org/EC/1.5.1.11 ec-1.5.1.11]
* centisome-position:
+
== Reaction formula ==
** 11.144467   
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* 1 [[ARG]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CPD-309]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c]
== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ15888]]
== Reaction(s) associated ==
 
* [[RXN-12615]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
* [[RXN-7682]]
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== Pathway(s) ==
** Category: [[annotation]]
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* [[PWY-7351]], pyruvate fermentation to opines: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7351 PWY-7351]
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** '''1''' reactions found over '''5''' reactions in the full pathway
* [[RXN0-901]]
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== Reconstruction information  ==
** Category: [[annotation]]
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
== External links  ==
* [[XANTHINE-OXIDASE-RXN]]
+
* RHEA:
** Category: [[annotation]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16287 16287]
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* LIGAND-RXN:
== Pathway(s) associated ==
+
** [http://www.genome.jp/dbget-bin/www_bget?R00562 R00562]
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
* [[PWY-6596]]
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{{#set: common-name=d-octopine dehydrogenase}}
** '''7''' reactions found over '''8''' reactions in the full pathway
+
{{#set: ec-number=ec-1.5.1.11}}
* [[P164-PWY]]
+
{{#set: nb gene associated=1}}
** '''6''' reactions found over '''17''' reactions in the full pathway
+
{{#set: nb pathway associated=1}}
* [[SALVADEHYPOX-PWY]]
+
{{#set: reconstruction category=annotation}}
** '''5''' reactions found over '''5''' reactions in the full pathway
+
{{#set: reconstruction tool=pathwaytools}}
* [[PWY-5497]]
+
{{#set: reconstruction comment=n.a}}
** '''10''' reactions found over '''24''' reactions in the full pathway
+
{{#set: reconstruction source=saccharina_japonica_genome}}
* [[PWY-6606]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6607]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6999]]
 
** '''2''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6608]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6538]]
 
** '''2''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-5695]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
</div>
 
{{#set: transcription-direction=negative}}
 
{{#set: right-end-position=60946}}
 
{{#set: left-end-position=54941}}
 
{{#set: centisome-position=11.144467    }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=4}}
 
{{#set: nb pathway associated=10}}
 

Revision as of 09:28, 27 August 2019

Reaction 1.5.1.11-RXN

  • direction:
    • left-to-right
  • common-name:
    • d-octopine dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7351, pyruvate fermentation to opines: PWY-7351
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links