Difference between revisions of "CPD0-1422"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] == * direction: ** left-to-right * common-name: ** uroporphyrino...")
(Created page with "Category:gene == Gene SJ00968 == * transcription-direction: ** negative * right-end-position: ** 88902 * left-end-position: ** 79931 * centisome-position: ** 50.294476...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] ==
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== Gene SJ00968 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* common-name:
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* right-end-position:
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** uroporphyrinogen iii synthase
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** 88902
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/4.2.1.75 ec-4.2.1.75]
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** 79931
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== Reaction formula ==
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* centisome-position:
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* 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 1 [[WATER]][c]
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** 50.294476   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[SJ19532]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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* [[RXN-12456]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-1281]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: transcription-direction=negative}}
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== Pathway(s)  ==
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{{#set: right-end-position=88902}}
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* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
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{{#set: left-end-position=79931}}
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** '''3''' reactions found over '''4''' reactions in the full pathway
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{{#set: centisome-position=50.294476    }}
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* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** '''6''' reactions found over '''6''' reactions in the full pathway
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{{#set: nb reaction associated=2}}
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03165 R03165]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P10746 P10746]
 
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** [http://www.uniprot.org/uniprot/P51163 P51163]
 
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** [http://www.uniprot.org/uniprot/P21248 P21248]
 
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** [http://www.uniprot.org/uniprot/Q58401 Q58401]
 
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** [http://www.uniprot.org/uniprot/P09126 P09126]
 
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** [http://www.uniprot.org/uniprot/Q59294 Q59294]
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=uroporphyrinogen iii synthase}}
 
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{{#set: ec-number=ec-4.2.1.75}}
 
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:29, 27 August 2019

Gene SJ00968

  • transcription-direction:
    • negative
  • right-end-position:
    • 88902
  • left-end-position:
    • 79931
  • centisome-position:
    • 50.294476

Organism(s) associated with this gene

Reaction(s) associated




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