Difference between revisions of "CPD-19010"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5286 RXN-5286] == * direction: ** left-to-right * common-name: ** 3,8-divinyl-chlorophyllide 8-...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** left-to-right * common-name: ** fatty acid synthase ** 3-hydr...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** 3 | + | ** fatty acid synthase |
+ | ** 3-hydroxydecanoyl-[acp] dehydrase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.3.1. | + | ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] |
+ | ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] | ||
+ | ** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59] | ||
+ | * synonymous: | ||
+ | ** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase | ||
+ | ** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase | ||
+ | ** hddase | ||
+ | ** β-hydroxyacyl-acp dehydrase | ||
+ | ** β-hydroxydecanoate dehydrase | ||
+ | ** β-hydroxydecanoyl thiol ester dehydrase | ||
+ | ** β-hydroxyacyl-acyl carrier protein dehydratase | ||
+ | ** faba | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ19629]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ06616]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ10624]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ11672]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ15983]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ06944]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ18059]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ17743]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ03883]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ06617]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ04769]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00613]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00320]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ13014]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ04443]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ10275]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | </div> | |
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY0-862]], (5Z)-dodecenoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862] |
− | ** ''' | + | ** '''5''' reactions found over '''6''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] |
− | + | ** '''31''' reactions found over '''31''' reactions in the full pathway | |
− | + | * [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] | |
− | + | ** '''31''' reactions found over '''31''' reactions in the full pathway | |
− | |||
− | |||
− | |||
− | ** ''' | ||
− | * [[PWY- | ||
− | ** ''' | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
− | |||
− | |||
− | |||
− | |||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name=3 | + | {{#set: common-name=fatty acid synthase|3-hydroxydecanoyl-[acp] dehydrase}} |
− | {{#set: ec-number=ec-1.3.1. | + | {{#set: ec-number=ec-2.3.1.86|ec-4.2.1.59|ec-2.3.1.85}} |
− | {{#set: nb gene associated= | + | {{#set: synonymous=hddase|faba|β-hydroxyacyl-acp dehydrase|β-hydroxydecanoate dehydrase|β-hydroxydecanoyl thiol ester dehydrase|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase|β-hydroxyacyl-acyl carrier protein dehydratase|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=16}} |
− | {{#set: reconstruction category= | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction category=annotation}} |
+ | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome}} |
Revision as of 09:29, 27 August 2019
Contents
Reaction RXN-9655
- direction:
- left-to-right
- common-name:
- fatty acid synthase
- 3-hydroxydecanoyl-[acp] dehydrase
- ec-number:
- synonymous:
- (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
- d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
- hddase
- β-hydroxyacyl-acp dehydrase
- β-hydroxydecanoate dehydrase
- β-hydroxydecanoyl thiol ester dehydrase
- β-hydroxyacyl-acyl carrier protein dehydratase
- faba
Reaction formula
- 1 Beta-hydroxydecanoyl-ACPs[c] => 1 Trans-D2-decenoyl-ACPs[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ19629
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06616
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ10624
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ11672
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15983
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06944
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ18059
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ17743
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ03883
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06617
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ04769
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00613
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00320
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ13014
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ04443
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ10275
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-862, (5Z)-dodecenoate biosynthesis I: PWY0-862
- 5 reactions found over 6 reactions in the full pathway
- PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
- 31 reactions found over 31 reactions in the full pathway
- PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
- 31 reactions found over 31 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
Property "Common-name" (as page type) with input value "3-hydroxydecanoyl-[acp] dehydrase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
- Property "Synonymous" (as page type) with input value "d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
- Property "Synonymous" (as page type) with input value "(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.