Difference between revisions of "3.4.11.4-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5398 RXN0-5398] == * direction: ** reversible * common-name: ** pseudouridine-5'-phosphate gly...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6550 RXN-6550] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5398 RXN0-5398] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6550 RXN-6550] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** pseudouridine-5'-phosphate glycosidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.70 ec-4.2.1.70]
+
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-15317]][c] '''+''' 1 [[URACIL]][c] '''<=>''' 1 [[PSEUDOURIDINE-5-P]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD1F-137]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6224]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04700]]
+
* Gene: [[SJ14675]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07557]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14670]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14672]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08018]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6019]], pseudouridine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6019 PWY-6019]
+
* [[PWY-102]], gibberellin inactivation I (2&beta;-hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18340 18340]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9JWF1 Q9JWF1]
 
−
** [http://www.uniprot.org/uniprot/Q9JTX5 Q9JTX5]
 
−
** [http://www.uniprot.org/uniprot/Q9PPJ9 Q9PPJ9]
 
−
** [http://www.uniprot.org/uniprot/Q9CGH0 Q9CGH0]
 
−
** [http://www.uniprot.org/uniprot/Q9CI80 Q9CI80]
 
−
** [http://www.uniprot.org/uniprot/Q9JX44 Q9JX44]
 
−
** [http://www.uniprot.org/uniprot/Q9V1A5 Q9V1A5]
 
−
** [http://www.uniprot.org/uniprot/Q9PP96 Q9PP96]
 
−
** [http://www.uniprot.org/uniprot/Q9PN18 Q9PN18]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ89 Q9PJ89]
 
−
** [http://www.uniprot.org/uniprot/Q9PNJ2 Q9PNJ2]
 
−
** [http://www.uniprot.org/uniprot/Q9PLW9 Q9PLW9]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01055 R01055]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06338 R06338]
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=pseudouridine-5'-phosphate glycosidase}}
+
{{#set: ec-number=ec-1.14.11}}
−
{{#set: ec-number=ec-4.2.1.70}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:31, 27 August 2019

Reaction RXN-6550

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-102, gibberellin inactivation I (2β-hydroxylation): PWY-102
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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