Difference between revisions of "RXN-1826"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=XANTHINE-OXIDASE-RXN XANTHINE-OXIDASE-RXN] == * direction: ** left-to-right * common-name: ** xanth...") |
(Created page with "Category:reaction == Reaction IMP-DEHYDROG-RXN == * direction: ** reversible * common-name: ** imp dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.205 ec-...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction IMP-DEHYDROG-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** imp dehydrogenase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.1.1.205 ec-1.1.1.205] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[IMP]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ21569]] | |
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− | |||
− | |||
− | |||
− | |||
− | |||
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | * Gene: [[SJ08176]] | |
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ22514]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-5695]], inosine 5'-phosphate degradation: |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6596]], adenosine nucleotides degradation I: |
− | ** ''' | + | ** '''7''' reactions found over '''8''' reactions in the full pathway |
+ | * [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11711 11711] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01130 R01130] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P12268 P12268] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P21620 P21620] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P50098 P50098] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/P50097 P50097] |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/O26245 O26245] |
− | {{#set: ec-number=ec-1. | + | ** [http://www.uniprot.org/uniprot/Q9PAR5 Q9PAR5] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P65172 P65172] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/Q9X168 Q9X168] |
+ | ** [http://www.uniprot.org/uniprot/Q9KTW3 Q9KTW3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YBU2 Q9YBU2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CIY6 Q9CIY6] | ||
+ | ** [http://www.uniprot.org/uniprot/P21879 P21879] | ||
+ | ** [http://www.uniprot.org/uniprot/P0ADG7 P0ADG7] | ||
+ | ** [http://www.uniprot.org/uniprot/P56088 P56088] | ||
+ | ** [http://www.uniprot.org/uniprot/P49058 P49058] | ||
+ | ** [http://www.uniprot.org/uniprot/O58045 O58045] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UY49 Q9UY49] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PKM2 Q9PKM2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RT87 Q9RT87] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUD0 Q9JUD0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59011 Q59011] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNN3 Q9PNN3] | ||
+ | ** [http://www.uniprot.org/uniprot/P44334 P44334] | ||
+ | ** [http://www.uniprot.org/uniprot/O67820 O67820] | ||
+ | ** [http://www.uniprot.org/uniprot/P65167 P65167] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZL14 Q9ZL14] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JZB5 Q9JZB5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9HXM5 Q9HXM5] | ||
+ | ** [http://www.uniprot.org/uniprot/P0C0H6 P0C0H6] | ||
+ | ** [http://www.uniprot.org/uniprot/P42851 P42851] | ||
+ | ** [http://www.uniprot.org/uniprot/P47996 P47996] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RHG9 Q9RHG9] | ||
+ | ** [http://www.uniprot.org/uniprot/P24547 P24547] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RHG1 Q9RHG1] | ||
+ | ** [http://www.uniprot.org/uniprot/P31002 P31002] | ||
+ | ** [http://www.uniprot.org/uniprot/Q07152 Q07152] | ||
+ | ** [http://www.uniprot.org/uniprot/P38697 P38697] | ||
+ | ** [http://www.uniprot.org/uniprot/P50094 P50094] | ||
+ | ** [http://www.uniprot.org/uniprot/P39567 P39567] | ||
+ | ** [http://www.uniprot.org/uniprot/P50095 P50095] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49729 Q49729] | ||
+ | ** [http://www.uniprot.org/uniprot/O14344 O14344] | ||
+ | ** [http://www.uniprot.org/uniprot/O32912 O32912] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=imp dehydrogenase}} | ||
+ | {{#set: ec-number=ec-1.1.1.205}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=3}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}} |
Revision as of 20:41, 18 December 2020
Contents
Reaction IMP-DEHYDROG-RXN
- direction:
- reversible
- common-name:
- imp dehydrogenase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ21569
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ08176
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ22514
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5695, inosine 5'-phosphate degradation:
- 4 reactions found over 4 reactions in the full pathway
- PWY-6596, adenosine nucleotides degradation I:
- 7 reactions found over 8 reactions in the full pathway
- PWY-7221, guanosine ribonucleotides de novo biosynthesis:
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P12268
- P21620
- P50098
- P50097
- O26245
- Q9PAR5
- P65172
- Q9X168
- Q9KTW3
- Q9YBU2
- Q9CIY6
- P21879
- P0ADG7
- P56088
- P49058
- O58045
- Q9UY49
- Q9PKM2
- Q9RT87
- Q9JUD0
- Q59011
- Q9PNN3
- P44334
- O67820
- P65167
- Q9ZL14
- Q9JZB5
- Q9HXM5
- P0C0H6
- P42851
- P47996
- Q9RHG9
- P24547
- Q9RHG1
- P31002
- Q07152
- P38697
- P50094
- P39567
- P50095
- Q49729
- O14344
- O32912