Difference between revisions of "SJ04038"

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(Created page with "Category:gene == Gene SJ08678 == * transcription-direction: ** positive * right-end-position: ** 24938 * left-end-position: ** 14666 * centisome-position: ** 28.898521...")
(Created page with "Category:gene == Gene SJ00040 == * transcription-direction: ** positive * right-end-position: ** 616633 * left-end-position: ** 611459 * centisome-position: ** 41.62261...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ08678 ==
+
== Gene SJ00040 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 24938
+
** 616633
 
* left-end-position:
 
* left-end-position:
−
** 14666
+
** 611459
 
* centisome-position:
 
* centisome-position:
−
** 28.898521    
+
** 41.62261    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ASPAMINOTRANS-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ECH_LPAREN_3hivcoa_RPAREN_]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ECH_LPAREN_3hmbcoa_RPAREN_]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ECOAH5m]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[HBCHLm]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[PHEAMINOTRANS-RXN]]
+
* [[RXN-12567]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13616]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* [[RXN-13721]]
−
* [[RXN-10814]]
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14272]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-11737]]
+
* [[RXN-14273]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-13697]]
+
* [[RXN-6383]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[SUCCINYLDIAMINOPIMTRANS-RXN]]
+
* [[RXN-6384]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1K-87]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ASPARAGINE-DEG1-PWY-1]]
+
* [[VALDEG-PWY]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[ASPARTATESYN-PWY]]
+
* [[PWY-6863]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[GLUTDEG-PWY]]
+
* [[PWY-7094]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5913]]
+
* [[PWY-7656]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''22''' reactions in the full pathway
−
* [[PWY-7383]]
+
* [[PWY-7654]]
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7117]]
+
* [[PWY-3941]]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7115]]
+
* [[PWY-5744]]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''13''' reactions in the full pathway
−
* [[ASPARTATE-DEG1-PWY]]
+
* [[PWY-7574]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
+
* [[PWY-5743]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''13''' reactions in the full pathway
−
* [[ANAPHENOXI-PWY]]
+
* [[PWY-5789]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''8''' reactions found over '''18''' reactions in the full pathway
−
* [[PHESYN]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7432]]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5079]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6318]]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6638]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6642]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6643]]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[DAPLYSINESYN-PWY]]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=24938}}
+
{{#set: right-end-position=616633}}
−
{{#set: left-end-position=14666}}
+
{{#set: left-end-position=611459}}
−
{{#set: centisome-position=28.898521   }}
+
{{#set: centisome-position=41.62261   }}
−
{{#set: organism associated=S.japonica_sterols_curated}}
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=13}}
−
{{#set: nb pathway associated=18}}
+
{{#set: nb pathway associated=10}}

Revision as of 14:47, 5 January 2021

Gene SJ00040

  • transcription-direction:
    • positive
  • right-end-position:
    • 616633
  • left-end-position:
    • 611459
  • centisome-position:
    • 41.62261

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-6863
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7094
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7656
    • 4 reactions found over 22 reactions in the full pathway
  • PWY-7654
    • 5 reactions found over 11 reactions in the full pathway
  • PWY-3941
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-7574
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ04038&oldid=55554"