Difference between revisions of "SJ15041"
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(Created page with "Category:gene == Gene SJ10100 == * transcription-direction: ** positive * right-end-position: ** 371133 * left-end-position: ** 348566 * centisome-position: ** 87.54179...") |
(Created page with "Category:gene == Gene SJ12510 == * transcription-direction: ** negative * right-end-position: ** 164288 * left-end-position: ** 135322 * centisome-position: ** 37.82702...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ12510 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 164288 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 135322 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 37.82702 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_carotenoid_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[ADENYL-KIN-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[PGCM]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[PGMTh]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[PHOSPHOGLUCMUT-RXN]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14456]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
+ | * [[RXN-16997]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[RXN-16998]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''5''' reactions found over '''6''' reactions in the full pathway | + | * [[PWY-7219]] |
− | {{#set: transcription-direction= | + | ** '''4''' reactions found over '''3''' reactions in the full pathway |
− | {{#set: right-end-position= | + | * [[PWY-6737]] |
− | {{#set: left-end-position= | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
− | {{#set: centisome-position= | + | * [[PWY-7238]] |
− | {{#set: organism associated=S. | + | ** '''5''' reactions found over '''8''' reactions in the full pathway |
− | {{#set: nb reaction associated= | + | * [[GLYCOGENSYNTH-PWY]] |
− | {{#set: nb pathway associated= | + | ** '''1''' reactions found over '''4''' reactions in the full pathway |
+ | * [[GLUCOSE1PMETAB-PWY]] | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7900]] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6731]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5941]] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[GLYCOCAT-PWY]] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-622]] | ||
+ | ** '''2''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6317]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-2723]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-3801]] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7343]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-5940]] | ||
+ | ** '''2''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-7902]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5384]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5661]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY66-422]] | ||
+ | ** '''5''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=164288}} | ||
+ | {{#set: left-end-position=135322}} | ||
+ | {{#set: centisome-position=37.82702 }} | ||
+ | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
+ | {{#set: nb reaction associated=7}} | ||
+ | {{#set: nb pathway associated=19}} |
Revision as of 14:51, 5 January 2021
Contents
Gene SJ12510
- transcription-direction:
- negative
- right-end-position:
- 164288
- left-end-position:
- 135322
- centisome-position:
- 37.82702
Organism(s) associated with this gene
Reaction(s) associated
- ADENYL-KIN-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- PGCM
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PGMTh
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PHOSPHOGLUCMUT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14456
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-16997
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16998
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7219
- 4 reactions found over 3 reactions in the full pathway
- PWY-6737
- 2 reactions found over 4 reactions in the full pathway
- PWY-7238
- 5 reactions found over 8 reactions in the full pathway
- GLYCOGENSYNTH-PWY
- 1 reactions found over 4 reactions in the full pathway
- GLUCOSE1PMETAB-PWY
- 3 reactions found over 5 reactions in the full pathway
- PWY-7900
- 2 reactions found over 8 reactions in the full pathway
- PWY-6731
- 2 reactions found over 4 reactions in the full pathway
- PWY-5941
- 3 reactions found over 6 reactions in the full pathway
- GLYCOCAT-PWY
- 6 reactions found over 8 reactions in the full pathway
- PWY-622
- 2 reactions found over 10 reactions in the full pathway
- PWY-6317
- 5 reactions found over 5 reactions in the full pathway
- PWY-2723
- 2 reactions found over 3 reactions in the full pathway
- PWY-3801
- 4 reactions found over 5 reactions in the full pathway
- PWY-7343
- 2 reactions found over 2 reactions in the full pathway
- PWY-5940
- 2 reactions found over 18 reactions in the full pathway
- PWY-7902
- 2 reactions found over 5 reactions in the full pathway
- PWY-5384
- 3 reactions found over 4 reactions in the full pathway
- PWY-5661
- 2 reactions found over 3 reactions in the full pathway
- PWY66-422
- 5 reactions found over n.a reactions in the full pathway