Difference between revisions of "ExchangeSeed-AMMONIA"
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(Created page with "Category:reaction == Reaction RXN21166 == * direction: ** left-to-right == Reaction formula == * 1.0 CPD-22765[c] '''=>''' 1.0 CPD-22766[c] == Gene(s) associated w...") |
(Created page with "Category:reaction == Reaction RXN-11026 == * direction: ** left-to-right * common-name: ** acyl-coa oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction RXN-11026 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** acyl-coa oxidase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ07452]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
+ | * Gene: [[SJ07451]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13468]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ03090]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ19669]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7007]], methyl ketone biosynthesis (engineered): |
− | ** ''' | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
+ | * [[PWY-7288]], fatty acid β-oxidation VII (yeast peroxisome): | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5136]], fatty acid β-oxidation II (plant peroxisome): | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY66-391]], fatty acid β-oxidation VI (mammalian peroxisome): | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=38960 38960] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/O65202 O65202] | ||
+ | ** [http://www.uniprot.org/uniprot/O65201 O65201] | ||
+ | ** [http://www.uniprot.org/uniprot/O23977 O23977] | ||
+ | ** [http://www.uniprot.org/uniprot/P13711 P13711] | ||
+ | ** [http://www.uniprot.org/uniprot/P34355 P34355] | ||
+ | ** [http://www.uniprot.org/uniprot/P07872 P07872] | ||
+ | ** [http://www.uniprot.org/uniprot/P11356 P11356] | ||
+ | ** [http://www.uniprot.org/uniprot/P06598 P06598] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00468 Q00468] | ||
+ | ** [http://www.uniprot.org/uniprot/Q15067 Q15067] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388] | ||
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: common-name=acyl-coa oxidase}} |
− | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-1.3.3.6}} |
− | {{#set: reconstruction category= | + | {{#set: nb gene associated=5}} |
− | {{#set: reconstruction tool= | + | {{#set: nb pathway associated=4}} |
− | {{#set: reconstruction comment= | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction source= | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:01, 5 January 2021
Contents
Reaction RXN-11026
- direction:
- left-to-right
- common-name:
- acyl-coa oxidase
- ec-number:
Reaction formula
- 1 OXYGEN-MOLECULE[c] + 1 Saturated-Fatty-Acyl-CoA[c] => 1 HYDROGEN-PEROXIDE[c] + 1 TRANS-D2-ENOYL-COA[c]
Gene(s) associated with this reaction
- Gene: SJ07452
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ07451
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13468
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ03090
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ19669
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-7007, methyl ketone biosynthesis (engineered):
- 4 reactions found over 6 reactions in the full pathway
- PWY-7288, fatty acid β-oxidation VII (yeast peroxisome):
- 4 reactions found over 5 reactions in the full pathway
- PWY-5136, fatty acid β-oxidation II (plant peroxisome):
- 5 reactions found over 5 reactions in the full pathway
- PWY66-391, fatty acid β-oxidation VI (mammalian peroxisome):
- 6 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links