Difference between revisions of "RXN0-5114"
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(Created page with "Category:reaction == Reaction 5-OXOPROLINASE-ATP-HYDROLYSING-RXN == * direction: ** left-to-right * common-name: ** 5-oxo-l-prolinase * ec-number: ** [http://enzyme.expasy...") |
(Created page with "Category:reaction == Reaction PROLINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** proline-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PROLINE--TRNA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** proline-trna ligase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[PRO-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ08366]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16508]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16507]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[TRNA-CHARGING-PWY]], tRNA charging: |
− | + | ** '''21''' reactions found over '''21''' reactions in the full pathway | |
− | |||
− | ** ''' | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14306 14306] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O51363 O51363] |
+ | ** [http://www.uniprot.org/uniprot/O58734 O58734] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6] | ||
+ | ** [http://www.uniprot.org/uniprot/P43830 P43830] | ||
+ | ** [http://www.uniprot.org/uniprot/P47525 P47525] | ||
+ | ** [http://www.uniprot.org/uniprot/O26708 O26708] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58635 Q58635] | ||
+ | ** [http://www.uniprot.org/uniprot/P56124 P56124] | ||
+ | ** [http://www.uniprot.org/uniprot/O83195 O83195] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851] | ||
+ | ** [http://www.uniprot.org/uniprot/O31755 O31755] | ||
+ | ** [http://www.uniprot.org/uniprot/P36431 P36431] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4] | ||
+ | ** [http://www.uniprot.org/uniprot/P75382 P75382] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49090 Q49090] | ||
+ | ** [http://www.uniprot.org/uniprot/P07814 P07814] | ||
+ | ** [http://www.uniprot.org/uniprot/P16659 P16659] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=proline-trna ligase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-6.1.1.15}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=1}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
− | {{#set: reconstruction tool=pantograph | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:03, 5 January 2021
Contents
Reaction PROLINE--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- proline-trna ligase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ08366
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16508
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16507
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging:
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links