Difference between revisions of "SJ02251"
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(Created page with "Category:gene == Gene SJ04979 == * transcription-direction: ** positive * right-end-position: ** 561531 * left-end-position: ** 543693 * centisome-position: ** 56.304253...") |
(Created page with "Category:gene == Gene SJ18471 == * transcription-direction: ** negative * right-end-position: ** 230453 * left-end-position: ** 211671 * centisome-position: ** 86.64885...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ18471 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 230453 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 211671 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 86.64885 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[ACONITATEDEHYDR-RXN]] |
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ACONITATEHYDR-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14047]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''6''' reactions found over '''5''' reactions in the full pathway | + | * [[TCA]] |
− | * [[PWY- | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-6549]] |
− | * [[PWY- | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-5392]] |
− | * [[PWY- | + | ** '''6''' reactions found over '''12''' reactions in the full pathway |
− | ** '''6''' reactions found over '''10''' reactions in the full pathway | + | * [[PWY-5690]] |
− | {{#set: transcription-direction= | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
− | {{#set: right-end-position= | + | * [[P105-PWY]] |
− | {{#set: left-end-position= | + | ** '''10''' reactions found over '''11''' reactions in the full pathway |
− | {{#set: centisome-position= | + | * [[REDCITCYC]] |
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-398]] | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7254]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5750]] | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-5913]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[P23-PWY]] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7124]] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6728]] | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=230453}} | ||
+ | {{#set: left-end-position=211671}} | ||
+ | {{#set: centisome-position=86.64885 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=16}} |
Revision as of 15:22, 5 January 2021
Contents
Gene SJ18471
- transcription-direction:
- negative
- right-end-position:
- 230453
- left-end-position:
- 211671
- centisome-position:
- 86.64885
Organism(s) associated with this gene
Reaction(s) associated
- ACONITATEDEHYDR-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- ACONITATEHYDR-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-14047
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- TCA
- 9 reactions found over 10 reactions in the full pathway
- PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-5392
- 6 reactions found over 12 reactions in the full pathway
- PWY-5690
- 8 reactions found over 9 reactions in the full pathway
- P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- REDCITCYC
- 5 reactions found over 9 reactions in the full pathway
- PWY66-398
- 10 reactions found over 10 reactions in the full pathway
- PWY-7254
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- GLYOXYLATE-BYPASS
- 6 reactions found over 6 reactions in the full pathway
- PWY-5750
- 3 reactions found over 2 reactions in the full pathway
- PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWY-7124
- 8 reactions found over 8 reactions in the full pathway
- PWY-6728
- 11 reactions found over 19 reactions in the full pathway