Difference between revisions of "2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-10617 == * direction: ** left-to-right * common-name: ** glucuronosyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.17 ec...") |
(Created page with "Category:reaction == Reaction NAD-SYNTH-GLN-RXN == * direction: ** left-to-right * common-name: ** nad+ synthetase, glutamine dependent * ec-number: ** [http://enzyme.expa...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction NAD-SYNTH-GLN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** nad+ synthetase, glutamine dependent |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.3.5.1 ec-6.3.5.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[DEAMIDO-NAD]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ20196]] | |
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | + | ** Category: [[orthology]] | |
− | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | ** Category: [[ | ||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7761]], NAD salvage pathway II (PNC IV cycle): |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle): | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate): | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5381]], pyridine nucleotide cycling (plants): | ||
+ | ** '''6''' reactions found over '''11''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24385 24385] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00257 R00257] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PPB0 Q9PPB0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTY7 Q9JTY7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CGJ4 Q9CGJ4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z4V9 Q9Z4V9] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=nad+ synthetase, glutamine dependent}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-6.3.5.1}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:36, 5 January 2021
Contents
Reaction NAD-SYNTH-GLN-RXN
- direction:
- left-to-right
- common-name:
- nad+ synthetase, glutamine dependent
- ec-number:
Reaction formula
- 1 ATP[c] + 1 DEAMIDO-NAD[c] + 1 GLN[c] + 1 WATER[c] => 1 AMP[c] + 1 GLT[c] + 1 NAD[c] + 1 PPI[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ20196
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7761, NAD salvage pathway II (PNC IV cycle):
- 3 reactions found over 4 reactions in the full pathway
- PWY-5653, NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
- 3 reactions found over 4 reactions in the full pathway
- PYRIDNUCSAL-PWY, NAD salvage pathway I (PNC VI cycle):
- 4 reactions found over 6 reactions in the full pathway
- PYRIDNUCSYN-PWY, NAD de novo biosynthesis I (from aspartate):
- 6 reactions found over 6 reactions in the full pathway
- PWY-5381, pyridine nucleotide cycling (plants):
- 6 reactions found over 11 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links