Difference between revisions of "SJ14458"
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(Created page with "Category:gene == Gene SJ07399 == * transcription-direction: ** negative * right-end-position: ** 44013 * left-end-position: ** 34598 * centisome-position: ** 50.848007...") |
(Created page with "Category:gene == Gene SJ09366 == * transcription-direction: ** positive * right-end-position: ** 423506 * left-end-position: ** 411196 * centisome-position: ** 50.10571...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ09366 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 423506 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 411196 |
* centisome-position: | * centisome-position: | ||
− | ** 50. | + | ** 50.10571 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[ACETYLGLUTKIN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[AGK]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ASPARTATEKIN-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[GLUTKIN-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12002]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-15005]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''7''' reactions found over ''' | + | * [[GLUTORN-PWY]] |
− | * [[PWY- | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
+ | * [[ARGSYNBSUB-PWY]] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5154]] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5097]] | ||
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6559]] | ||
** '''2''' reactions found over '''4''' reactions in the full pathway | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
− | {{#set: transcription-direction= | + | * [[P101-PWY]] |
− | {{#set: right-end-position= | + | ** '''2''' reactions found over '''5''' reactions in the full pathway |
− | {{#set: left-end-position= | + | * [[DAPLYSINESYN-PWY]] |
− | {{#set: centisome-position=50. | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-2941]] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-2942]] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6562]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7153]] | ||
+ | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[HOMOSERSYN-PWY]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6922]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[ARGININE-SYN4-PWY]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-3341]] | ||
+ | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PROSYN-PWY]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]] | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7176]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7400]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=positive}} | ||
+ | {{#set: right-end-position=423506}} | ||
+ | {{#set: left-end-position=411196}} | ||
+ | {{#set: centisome-position=50.10571 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=6}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=19}} |
Revision as of 12:58, 14 January 2021
Contents
Gene SJ09366
- transcription-direction:
- positive
- right-end-position:
- 423506
- left-end-position:
- 411196
- centisome-position:
- 50.10571
Organism(s) associated with this gene
Reaction(s) associated
- ACETYLGLUTKIN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- AGK
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ASPARTATEKIN-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- GLUTKIN-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12002
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-15005
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- GLUTORN-PWY
- 5 reactions found over 5 reactions in the full pathway
- ARGSYNBSUB-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-5154
- 8 reactions found over 9 reactions in the full pathway
- PWY-5097
- 7 reactions found over 7 reactions in the full pathway
- PWY-6559
- 2 reactions found over 4 reactions in the full pathway
- P101-PWY
- 2 reactions found over 5 reactions in the full pathway
- DAPLYSINESYN-PWY
- 7 reactions found over 9 reactions in the full pathway
- PWY-2941
- 6 reactions found over 9 reactions in the full pathway
- PWY-2942
- 6 reactions found over 7 reactions in the full pathway
- PWY-6562
- 2 reactions found over 6 reactions in the full pathway
- PWY-7153
- 4 reactions found over 8 reactions in the full pathway
- HOMOSERSYN-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY-6922
- 5 reactions found over 7 reactions in the full pathway
- ARGININE-SYN4-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY-3341
- 4 reactions found over 3 reactions in the full pathway
- PROSYN-PWY
- 3 reactions found over 4 reactions in the full pathway
- CITRULBIO-PWY
- 7 reactions found over 8 reactions in the full pathway
- PWY-7176
- 3 reactions found over 3 reactions in the full pathway
- PWY-7400
- 7 reactions found over 9 reactions in the full pathway