Difference between revisions of "PRAISOM-RXN"
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(Created page with "Category:reaction == Reaction 2.7.9.3-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.7.9.3 ec-2.7.9.3] == Reaction formula == * 1 AT...") |
(Created page with "Category:reaction == Reaction PRAISOM-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylanthranilate isomerase * ec-number: ** [http://enzyme.expasy.org...") |
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(2 intermediate revisions by the same user not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PRAISOM-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** phosphoribosylanthranilate isomerase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.3.1.24 ec-5.3.1.24] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[N-5-PHOSPHORIBOSYL-ANTHRANILATE]][c] '''=>''' 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ17722]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ01083]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[TRPSYN-PWY]], L-tryptophan biosynthesis: |
− | + | ** '''6''' reactions found over '''6''' reactions in the full pathway | |
− | |||
− | ** ''' | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR103156 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21541 21541] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03509 R03509] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P16923 P16923] |
+ | ** [http://www.uniprot.org/uniprot/O67853 O67853] | ||
+ | ** [http://www.uniprot.org/uniprot/P12289 P12289] | ||
+ | ** [http://www.uniprot.org/uniprot/P42393 P42393] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIF3 Q9PIF3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57893 Q57893] | ||
+ | ** [http://www.uniprot.org/uniprot/P20167 P20167] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVD1 Q9JVD1] | ||
+ | ** [http://www.uniprot.org/uniprot/P00910 P00910] | ||
+ | ** [http://www.uniprot.org/uniprot/P00909 P00909] | ||
+ | ** [http://www.uniprot.org/uniprot/P00912 P00912] | ||
+ | ** [http://www.uniprot.org/uniprot/P13997 P13997] | ||
+ | ** [http://www.uniprot.org/uniprot/P50857 P50857] | ||
+ | ** [http://www.uniprot.org/uniprot/P27710 P27710] | ||
+ | ** [http://www.uniprot.org/uniprot/P17218 P17218] | ||
+ | ** [http://www.uniprot.org/uniprot/P00908 P00908] | ||
+ | ** [http://www.uniprot.org/uniprot/P18483 P18483] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02002 Q02002] | ||
+ | ** [http://www.uniprot.org/uniprot/Q56320 Q56320] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01128 Q01128] | ||
+ | ** [http://www.uniprot.org/uniprot/P74435 P74435] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YGB1 Q9YGB1] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec- | + | {{#set: common-name=phosphoribosylanthranilate isomerase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-5.3.1.24}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=orthology|annotation}} |
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:19, 18 March 2021
Contents
Reaction PRAISOM-RXN
- direction:
- left-to-right
- common-name:
- phosphoribosylanthranilate isomerase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ17722
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ01083
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- TRPSYN-PWY, L-tryptophan biosynthesis:
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links