Difference between revisions of "FGAMSYN-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-12978 == * direction: ** left-to-right * common-name: ** acyl-coa synthetase ** long-chain fatty acid-coa ligase * ec-number: ** [http://...") |
(Created page with "Category:reaction == Reaction FGAMSYN-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylformylglycinamide synthetase * ec-number: ** [http://enzyme.expa...") |
||
(2 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction FGAMSYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** phosphoribosylformylglycinamide synthetase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/6. | + | ** [http://enzyme.expasy.org/EC/6.3.5.3 ec-6.3.5.3] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ09235]] | |
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ09236]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: | ||
+ | ** '''6''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR139278 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17129 17129] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R04463 R04463] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/O67691 O67691] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UXW5 Q9UXW5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNY0 Q9PNY0] | ||
+ | ** [http://www.uniprot.org/uniprot/O28339 O28339] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHZ7 Q9PHZ7] | ||
+ | ** [http://www.uniprot.org/uniprot/O26270 O26270] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59042 Q59042] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58660 Q58660] | ||
+ | ** [http://www.uniprot.org/uniprot/O27427 O27427] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWC5 Q9JWC5] | ||
+ | ** [http://www.uniprot.org/uniprot/P35852 P35852] | ||
+ | ** [http://www.uniprot.org/uniprot/P38972 P38972] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55843 Q55843] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55037 Q55037] | ||
+ | ** [http://www.uniprot.org/uniprot/P12041 P12041] | ||
+ | ** [http://www.uniprot.org/uniprot/P12042 P12042] | ||
+ | ** [http://www.uniprot.org/uniprot/P15254 P15254] | ||
+ | ** [http://www.uniprot.org/uniprot/O14228 O14228] | ||
+ | ** [http://www.uniprot.org/uniprot/P35421 P35421] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZB07 Q9ZB07] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZB06 Q9ZB06] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=phosphoribosylformylglycinamide synthetase}} |
− | {{#set: ec-number=ec-6. | + | {{#set: ec-number=ec-6.3.5.3}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction FGAMSYN-RXN
- direction:
- left-to-right
- common-name:
- phosphoribosylformylglycinamide synthetase
- ec-number:
Reaction formula
- 1 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE[c] + 1 ATP[c] + 1 GLN[c] + 1 WATER[c] => 1 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE[c] + 1 ADP[c] + 1 GLT[c] + 1 PROTON[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ09235
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ09236
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
- 6 reactions found over 5 reactions in the full pathway
- PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
- 5 reactions found over 5 reactions in the full pathway
- PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
- 4 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links