Difference between revisions of "6PGLUCONDEHYDROG-RXN"
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(Created page with "Category:reaction == Reaction 2-NITROPROPANE-DIOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** ethylnitronate monooxygenase * ec-number: ** [http://enzyme...") |
(Created page with "Category:reaction == Reaction 6PGLUCONDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating] *...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction 6PGLUCONDEHYDROG-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating] |
+ | ** phosphogluconate dehydrogenase (decarboxylating) | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351] |
+ | * synonymous: | ||
+ | ** 6-phosphogluconic carboxylase | ||
+ | ** phosphogluconic acid dehydrogenase | ||
+ | ** 6-phosphogluconic dehydrogenase | ||
+ | ** 6pgd | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[CPD- | + | * 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ16180]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
+ | * Gene: [[SJ15062]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ11815]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ14331]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ07211]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ06127]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ11912]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ12698]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ22264]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ12699]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ00878]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[P122-PWY]], heterolactic fermentation: |
− | ** ''' | + | ** '''16''' reactions found over '''18''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | |
− | + | * METANETX-RXN : MNXR115649 | |
− | * | ||
− | |||
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P14332 P14332] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P31072 P31072] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4] |
+ | ** [http://www.uniprot.org/uniprot/P47506 P47506] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3] | ||
+ | ** [http://www.uniprot.org/uniprot/P43774 P43774] | ||
+ | ** [http://www.uniprot.org/uniprot/P12013 P12013] | ||
+ | ** [http://www.uniprot.org/uniprot/P41576 P41576] | ||
+ | ** [http://www.uniprot.org/uniprot/P00350 P00350] | ||
+ | ** [http://www.uniprot.org/uniprot/P00349 P00349] | ||
+ | ** [http://www.uniprot.org/uniprot/P52209 P52209] | ||
+ | ** [http://www.uniprot.org/uniprot/P41581 P41581] | ||
+ | ** [http://www.uniprot.org/uniprot/P41582 P41582] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59275 Q59275] | ||
+ | ** [http://www.uniprot.org/uniprot/P41583 P41583] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60254 Q60254] | ||
+ | ** [http://www.uniprot.org/uniprot/P37754 P37754] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59410 Q59410] | ||
+ | ** [http://www.uniprot.org/uniprot/P52207 P52207] | ||
+ | ** [http://www.uniprot.org/uniprot/P70718 P70718] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M451 Q7M451] | ||
+ | ** [http://www.uniprot.org/uniprot/P41572 P41572] | ||
+ | ** [http://www.uniprot.org/uniprot/P14062 P14062] | ||
+ | ** [http://www.uniprot.org/uniprot/P21577 P21577] | ||
+ | ** [http://www.uniprot.org/uniprot/P38720 P38720] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40311 Q40311] | ||
+ | ** [http://www.uniprot.org/uniprot/P53319 P53319] | ||
+ | ** [http://www.uniprot.org/uniprot/O81237 O81237] | ||
+ | ** [http://www.uniprot.org/uniprot/O81238 O81238] | ||
+ | ** [http://www.uniprot.org/uniprot/O81239 O81239] | ||
+ | ** [http://www.uniprot.org/uniprot/O22111 O22111] | ||
+ | ** [http://www.uniprot.org/uniprot/Q17761 Q17761] | ||
+ | ** [http://www.uniprot.org/uniprot/O32911 O32911] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=phosphogluconate dehydrogenase (decarboxylating)|phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]}} |
− | {{#set: ec-number=ec-1. | + | {{#set: ec-number=ec-1.1.1.351}} |
− | {{#set: nb gene associated= | + | {{#set: synonymous=6pgd|phosphogluconic acid dehydrogenase|6-phosphogluconic dehydrogenase|6-phosphogluconic carboxylase}} |
+ | {{#set: nb gene associated=11}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:24, 18 March 2021
Contents
Reaction 6PGLUCONDEHYDROG-RXN
- direction:
- left-to-right
- common-name:
- phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
- phosphogluconate dehydrogenase (decarboxylating)
- ec-number:
- synonymous:
- 6-phosphogluconic carboxylase
- phosphogluconic acid dehydrogenase
- 6-phosphogluconic dehydrogenase
- 6pgd
Reaction formula
- 1 CPD-2961[c] + 1 NAD-P-OR-NOP[c] => 1 CARBON-DIOXIDE[c] + 1 NADH-P-OR-NOP[c] + 1 RIBULOSE-5P[c]
Gene(s) associated with this reaction
- Gene: SJ16180
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15062
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ11815
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ14331
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ07211
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06127
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ11912
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ12698
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ22264
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ12699
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ00878
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- P122-PWY, heterolactic fermentation:
- 16 reactions found over 18 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
Property "Common-name" (as page type) with input value "phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.