Difference between revisions of "SJ15062"
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(Created page with "Category:gene == Gene SJ20178 == * transcription-direction: ** positive * right-end-position: ** 44867 * left-end-position: ** 41373 * centisome-position: ** 6.6602707...") |
(Created page with "Category:gene == Gene SJ15062 == * transcription-direction: ** positive * right-end-position: ** 67825 * left-end-position: ** 54639 * centisome-position: ** 18.02066...") |
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(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ15062 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 67825 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 54639 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 18.02066 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[6PGLUCONDEHYDROG-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[PYRROLINECARBREDUCT-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-9952]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN66-546]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | == Pathway(s) associated == | ||
+ | * [[P122-PWY]] | ||
+ | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-3341]] | ||
+ | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PROSYN-PWY]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6344]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-4981]] | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[ARG-PRO-PWY]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[OXIDATIVEPENT-PWY]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=67825}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=54639}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=18.02066 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
+ | {{#set: nb pathway associated=7}} |
Latest revision as of 11:03, 18 March 2021
Contents
Gene SJ15062
- transcription-direction:
- positive
- right-end-position:
- 67825
- left-end-position:
- 54639
- centisome-position:
- 18.02066
Organism(s) associated with this gene
Reaction(s) associated
- 6PGLUCONDEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- PYRROLINECARBREDUCT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-9952
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-546
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-3341
- 4 reactions found over 3 reactions in the full pathway
- PROSYN-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY-6344
- 2 reactions found over 6 reactions in the full pathway
- PWY-4981
- 3 reactions found over 2 reactions in the full pathway
- ARG-PRO-PWY
- 3 reactions found over 4 reactions in the full pathway
- OXIDATIVEPENT-PWY
- 3 reactions found over 3 reactions in the full pathway