Difference between revisions of "SJ07112"
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(Created page with "Category:gene == Gene SJ20749 == * transcription-direction: ** negative * right-end-position: ** 1242 * left-end-position: ** 274 * centisome-position: ** 19.797688 ==...") |
(Created page with "Category:gene == Gene SJ07112 == * transcription-direction: ** negative * right-end-position: ** 144922 * left-end-position: ** 139340 * centisome-position: ** 30.009218...") |
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(One intermediate revision by one other user not shown) | |||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ07112 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 144922 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 139340 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 30.009218 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[2.1.1.5-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[MMUM-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[ | + | * [[PWY-3661]] |
− | ** ''' | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY-3661-1]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[ADENOSYLHOMOCYSCAT-PWY]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-702]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5441]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=144922}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=139340}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=30.009218 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Latest revision as of 11:10, 18 March 2021
Contents
Gene SJ07112
- transcription-direction:
- negative
- right-end-position:
- 144922
- left-end-position:
- 139340
- centisome-position:
- 30.009218
Organism(s) associated with this gene
Reaction(s) associated
- 2.1.1.5-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- MMUM-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-3661
- 3 reactions found over 7 reactions in the full pathway
- PWY-3661-1
- 2 reactions found over 4 reactions in the full pathway
- ADENOSYLHOMOCYSCAT-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY-702
- 5 reactions found over 6 reactions in the full pathway
- PWY-5441
- 1 reactions found over 2 reactions in the full pathway