Difference between revisions of "4.2.99.18-RXN"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPGFTh FPGFTh] == * direction: ** reversible * common-name: ** 10-formyltetrahydrofolate:5'-phospho...") |
(Created page with "Category:reaction == Reaction 4.2.99.18-RXN == * direction: ** left-to-right * common-name: ** dna-(apurinic or apyrimidinic site) lyase ** dna-ap site lyase * ec-number:...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction 4.2.99.18-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** dna-(apurinic or apyrimidinic site) lyase |
+ | ** dna-ap site lyase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.2.99.18 ec-4.2.99.18] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[3-terminal-unsaturated-sugars]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ01489]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ00230]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12532]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | * Gene: [[SJ12275]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ12201]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ18415]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ10690]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ04992]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ04314]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * METANETX-RXN : MNXR115619 |
− | {{#set: common-name= | + | * UNIPROT: |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P0AB83 P0AB83] |
+ | ** [http://www.uniprot.org/uniprot/P28352 P28352] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58829 Q58829] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1] | ||
+ | ** [http://www.uniprot.org/uniprot/P44319 P44319] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5] | ||
+ | ** [http://www.uniprot.org/uniprot/P04418 P04418] | ||
+ | ** [http://www.uniprot.org/uniprot/P27695 P27695] | ||
+ | ** [http://www.uniprot.org/uniprot/P23196 P23196] | ||
+ | ** [http://www.uniprot.org/uniprot/P22936 P22936] | ||
+ | ** [http://www.uniprot.org/uniprot/P43138 P43138] | ||
+ | ** [http://www.uniprot.org/uniprot/P95945 P95945] | ||
+ | ** [http://www.uniprot.org/uniprot/P50525 P50525] | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=dna-ap site lyase|dna-(apurinic or apyrimidinic site) lyase}} | ||
+ | {{#set: ec-number=ec-4.2.99.18}} | ||
+ | {{#set: nb gene associated=9}} | ||
{{#set: nb pathway associated=0}} | {{#set: nb pathway associated=0}} | ||
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:21, 18 March 2021
Contents
Reaction 4.2.99.18-RXN
- direction:
- left-to-right
- common-name:
- dna-(apurinic or apyrimidinic site) lyase
- dna-ap site lyase
- ec-number:
Reaction formula
- 1 DNA-containing-abasic-Sites[c] => 1 3-terminal-unsaturated-sugars[c] + 1 5-Phospho-terminated-DNAs[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ01489
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ00230
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12532
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ12275
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ12201
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ18415
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ10690
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ04992
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ04314
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR115619
- UNIPROT: