Difference between revisions of "SJ10812"
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(Created page with "Category:gene == Gene SJ16894 == * transcription-direction: ** positive * right-end-position: ** 265481 * left-end-position: ** 249445 * centisome-position: ** 90.47992...") |
(Created page with "Category:gene == Gene SJ10812 == * transcription-direction: ** positive * right-end-position: ** 144763 * left-end-position: ** 116858 * centisome-position: ** 30.486155...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ10812 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 144763 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 116858 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 30.486155 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[GLUTAMATE-SYNTHASE-NADH-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[GLUTAMATESYN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[GLUTAMIN-RXN]] |
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * [[GLUTDEHYD-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12878]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[PWY-6549]] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-4341]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-6964]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6963]] | ||
+ | ** '''4''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[GLUGLNSYN-PWY]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[GLUTSYN-PWY]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[GLUTAMINEFUM-PWY]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]] | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[GLUTAMINDEG-PWY]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[GLUTSYNIII-PWY]] | ||
** '''1''' reactions found over '''1''' reactions in the full pathway | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5675]] |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY490-3]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5913]] | ||
+ | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=144763}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=116858}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=30.486155 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=6}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=13}} |
Latest revision as of 11:04, 18 March 2021
Contents
Gene SJ10812
- transcription-direction:
- positive
- right-end-position:
- 144763
- left-end-position:
- 116858
- centisome-position:
- 30.486155
Organism(s) associated with this gene
Reaction(s) associated
- GLUTAMATE-SYNTHASE-FERREDOXIN-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- GLUTAMATE-SYNTHASE-NADH-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GLUTAMATESYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GLUTAMIN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GLUTDEHYD-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12878
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-4341
- 1 reactions found over 1 reactions in the full pathway
- PWY-6964
- 2 reactions found over 2 reactions in the full pathway
- PWY-6963
- 4 reactions found over 2 reactions in the full pathway
- GLUGLNSYN-PWY
- 1 reactions found over 1 reactions in the full pathway
- GLUTSYN-PWY
- 1 reactions found over 2 reactions in the full pathway
- GLUTAMINEFUM-PWY
- 1 reactions found over 1 reactions in the full pathway
- CITRULBIO-PWY
- 7 reactions found over 8 reactions in the full pathway
- GLUTAMINDEG-PWY
- 1 reactions found over 1 reactions in the full pathway
- GLUTSYNIII-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-5675
- 4 reactions found over 4 reactions in the full pathway
- PWY490-3
- 3 reactions found over 4 reactions in the full pathway
- PWY-5913
- 10 reactions found over 8 reactions in the full pathway