Difference between revisions of "SJ11625"
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(Created page with "Category:gene == Gene SJ12647 == * transcription-direction: ** negative * right-end-position: ** 114210 * left-end-position: ** 88629 * centisome-position: ** 24.852295...") |
(Created page with "Category:gene == Gene SJ11625 == * transcription-direction: ** positive * right-end-position: ** 382658 * left-end-position: ** 377677 * centisome-position: ** 48.458958...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ11625 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 382658 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 377677 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 48.458958 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[1.14.21.6-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-11887]] | ||
+ | ** Category: [[manual]] | ||
+ | *** source: [[reactions_add_sjap]]; tool: [[unknown-tool]]; comment: curation sterols (girard et al.) | ||
+ | * [[RXN-13883]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-13892]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-16378]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-22206]] | ||
+ | ** Category: [[manual]] | ||
+ | *** source: [[reactions_creator_sjap]]; tool: [[unknown-tool]]; comment: gallo2020 | ||
+ | * [[RXN-4209]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN3O-218]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | * [[PWY66-341]] |
− | ** ''' | + | ** '''14''' reactions found over '''18''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY66-3]] |
− | ** ''' | + | ** '''12''' reactions found over '''18''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY66-4]] |
− | ** '''6''' reactions found over ''' | + | ** '''14''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-8191]] |
− | ** ''' | + | ** '''11''' reactions found over '''19''' reactions in the full pathway |
− | {{#set: transcription-direction= | + | * [[PWY-7154]] |
− | {{#set: right-end-position= | + | ** '''2''' reactions found over '''11''' reactions in the full pathway |
− | {{#set: left-end-position= | + | * [[PWY-7155]] |
− | {{#set: centisome-position= | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
+ | * [[PWY-8238]] | ||
+ | ** '''2''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | * [[PWY-2541]] | ||
+ | ** '''11''' reactions found over '''35''' reactions in the full pathway | ||
+ | * [[PWY-6075]] | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | {{#set: transcription-direction=positive}} | ||
+ | {{#set: right-end-position=382658}} | ||
+ | {{#set: left-end-position=377677}} | ||
+ | {{#set: centisome-position=48.458958 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=8}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=9}} |
Latest revision as of 11:09, 18 March 2021
Contents
Gene SJ11625
- transcription-direction:
- positive
- right-end-position:
- 382658
- left-end-position:
- 377677
- centisome-position:
- 48.458958
Organism(s) associated with this gene
Reaction(s) associated
- 1.14.21.6-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-11887
- Category: manual
- source: reactions_add_sjap; tool: unknown-tool; comment: curation sterols (girard et al.)
- Category: manual
- RXN-13883
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-13892
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-16378
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-22206
- Category: manual
- source: reactions_creator_sjap; tool: unknown-tool; comment: gallo2020
- Category: manual
- RXN-4209
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN3O-218
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY66-341
- 14 reactions found over 18 reactions in the full pathway
- PWY66-3
- 12 reactions found over 18 reactions in the full pathway
- PWY66-4
- 14 reactions found over 4 reactions in the full pathway
- PWY-8191
- 11 reactions found over 19 reactions in the full pathway
- PWY-7154
- 2 reactions found over 11 reactions in the full pathway
- PWY-7155
- 4 reactions found over 6 reactions in the full pathway
- PWY-8238
- 2 reactions found over n.a reactions in the full pathway
- PWY-2541
- 11 reactions found over 35 reactions in the full pathway
- PWY-6075
- 3 reactions found over 5 reactions in the full pathway